Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01503 and SMc01502 are separated by 83 nucleotides SMc01502 and SMc01501 overlap by 4 nucleotides
SMc01503: SMc01503 - sugar kinase, at 2,625,527 to 2,627,110
SMc01503
SMc01502: SMc01502 - hydrolase phosphatase, at 2,627,194 to 2,627,868
SMc01502
SMc01501: SMc01501 - mannitol 2-dehydrogenase, at 2,627,865 to 2,629,349
SMc01501
Position (kb)
2627
2628 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2626.347 kb on + strand, within SMc01503 at 2626.348 kb on - strand, within SMc01503 at 2626.506 kb on + strand, within SMc01503 at 2626.507 kb on - strand, within SMc01503 at 2626.542 kb on + strand, within SMc01503 at 2626.543 kb on - strand, within SMc01503 at 2626.543 kb on - strand, within SMc01503 at 2626.565 kb on - strand, within SMc01503 at 2626.565 kb on - strand, within SMc01503 at 2626.565 kb on - strand, within SMc01503 at 2626.583 kb on - strand, within SMc01503 at 2626.608 kb on + strand, within SMc01503 at 2626.608 kb on + strand, within SMc01503 at 2626.608 kb on + strand, within SMc01503 at 2626.609 kb on - strand, within SMc01503 at 2626.609 kb on - strand, within SMc01503 at 2626.609 kb on - strand, within SMc01503 at 2626.609 kb on - strand, within SMc01503 at 2626.630 kb on - strand, within SMc01503 at 2626.630 kb on - strand, within SMc01503 at 2626.781 kb on + strand, within SMc01503 at 2627.038 kb on + strand at 2627.038 kb on + strand at 2627.038 kb on + strand at 2627.039 kb on - strand at 2627.039 kb on - strand at 2627.100 kb on + strand at 2627.100 kb on + strand at 2627.100 kb on + strand at 2627.101 kb on - strand at 2627.101 kb on - strand at 2627.101 kb on - strand at 2627.101 kb on - strand at 2627.195 kb on + strand at 2627.213 kb on - strand at 2627.390 kb on + strand, within SMc01502 at 2627.391 kb on - strand, within SMc01502 at 2627.581 kb on + strand, within SMc01502 at 2627.621 kb on + strand, within SMc01502 at 2627.622 kb on - strand, within SMc01502 at 2627.651 kb on - strand, within SMc01502 at 2627.815 kb on + strand at 2627.890 kb on + strand at 2628.287 kb on - strand, within SMc01501 at 2628.287 kb on - strand, within SMc01501 at 2628.777 kb on - strand, within SMc01501
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 2,626,347 + SMc01503 0.52 -3.5 2,626,348 - SMc01503 0.52 +0.6 2,626,506 + SMc01503 0.62 -0.0 2,626,507 - SMc01503 0.62 -0.9 2,626,542 + SMc01503 0.64 -2.7 2,626,543 - SMc01503 0.64 -3.5 2,626,543 - SMc01503 0.64 -0.4 2,626,565 - SMc01503 0.66 +1.1 2,626,565 - SMc01503 0.66 +0.8 2,626,565 - SMc01503 0.66 -1.1 2,626,583 - SMc01503 0.67 +0.9 2,626,608 + SMc01503 0.68 -0.6 2,626,608 + SMc01503 0.68 +0.1 2,626,608 + SMc01503 0.68 +0.6 2,626,609 - SMc01503 0.68 +1.5 2,626,609 - SMc01503 0.68 +0.8 2,626,609 - SMc01503 0.68 +0.1 2,626,609 - SMc01503 0.68 +0.5 2,626,630 - SMc01503 0.70 -1.2 2,626,630 - SMc01503 0.70 +0.9 2,626,781 + SMc01503 0.79 -2.8 2,627,038 + +0.5 2,627,038 + +0.5 2,627,038 + +0.6 2,627,039 - -0.4 2,627,039 - -0.4 2,627,100 + -2.3 2,627,100 + +0.5 2,627,100 + +0.5 2,627,101 - -0.0 2,627,101 - -2.0 2,627,101 - -0.8 2,627,101 - +1.0 2,627,195 + +0.6 2,627,213 - -1.0 2,627,390 + SMc01502 0.29 -0.1 2,627,391 - SMc01502 0.29 -0.7 2,627,581 + SMc01502 0.57 -1.2 2,627,621 + SMc01502 0.63 +0.2 2,627,622 - SMc01502 0.63 +1.4 2,627,651 - SMc01502 0.68 -0.1 2,627,815 + +0.1 2,627,890 + +1.3 2,628,287 - SMc01501 0.28 -1.7 2,628,287 - SMc01501 0.28 -1.5 2,628,777 - SMc01501 0.61 -1.2
Or see this region's nucleotide sequence