Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01156 and SMc01155 are separated by 4 nucleotides SMc01155 and SMc01154 are separated by 145 nucleotides SMc01154 and SMc01153 are separated by 57 nucleotides
SMc01156: SMc01156 - ubiquinone biosynthesis protein, at 393,673 to 395,247
SMc01156
SMc01155: SMc01155 - ubiquinone/menaquinone biosynthesis methyltransferase, at 395,252 to 396,064
SMc01155
SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115
SMc01154
SMc01153: SMc01153 - enoyl-CoA hydratase, at 397,173 to 397,946
SMc01153
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.128 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.187 kb on + strand at 396.188 kb on - strand at 396.385 kb on - strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.789 kb on - strand, within SMc01154 at 396.792 kb on + strand, within SMc01154 at 397.009 kb on - strand, within SMc01154 at 397.066 kb on + strand at 397.066 kb on + strand at 397.067 kb on - strand at 397.067 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.092 kb on + strand at 397.180 kb on - strand at 397.568 kb on + strand, within SMc01153 at 397.569 kb on - strand, within SMc01153
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 396,128 - +0.6 396,130 - +0.5 396,130 - +0.4 396,130 - +0.4 396,130 - -0.1 396,130 - +1.4 396,130 - -1.5 396,130 - -0.2 396,187 + +0.5 396,188 - -0.2 396,385 - SMc01154 0.19 +2.4 396,588 + SMc01154 0.42 +0.4 396,588 + SMc01154 0.42 -0.8 396,588 + SMc01154 0.42 -0.5 396,589 - SMc01154 0.42 +0.7 396,589 - SMc01154 0.42 +1.4 396,788 + SMc01154 0.64 -1.0 396,788 + SMc01154 0.64 +0.0 396,789 - SMc01154 0.64 +1.1 396,792 + SMc01154 0.64 +1.1 397,009 - SMc01154 0.88 +1.4 397,066 + -1.8 397,066 + +0.4 397,067 - -2.4 397,067 - +0.9 397,070 - +0.3 397,070 - -2.7 397,070 - +0.5 397,092 + -1.0 397,180 - +0.4 397,568 + SMc01153 0.51 +0.9 397,569 - SMc01153 0.51 +1.0
Or see this region's nucleotide sequence