Strain Fitness in Sinorhizobium meliloti 1021 around SMc01090

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01092 and SMc01091 are separated by 10 nucleotidesSMc01091 and SMc01090 are separated by 78 nucleotidesSMc01090 and SMc01089 are separated by 152 nucleotidesSMc01089 and SMc01732 are separated by 2 nucleotides SMc01092: SMc01092 - transcriptional regulator, at 466,650 to 467,540 SMc01092 SMc01091: SMc01091 - hypothetical protein, at 467,551 to 467,694 SMc01091 SMc01090: SMc01090 - ATP-dependent RNA helicase, at 467,773 to 469,665 SMc01090 SMc01089: SMc01089 - hypothetical protein, at 469,818 to 470,204 SMc01089 SMc01732: SMc01732 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 470,207 to 471,097 SMc01732 Position (kb) 467 468 469 470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 466.948 kb on + strand, within SMc01092at 466.984 kb on - strand, within SMc01092at 467.196 kb on + strand, within SMc01092at 467.196 kb on + strand, within SMc01092at 467.208 kb on + strand, within SMc01092at 467.209 kb on - strand, within SMc01092at 467.286 kb on + strand, within SMc01092at 467.288 kb on + strand, within SMc01092at 467.288 kb on + strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.317 kb on - strand, within SMc01092at 467.317 kb on - strand, within SMc01092at 467.442 kb on + strand, within SMc01092at 467.442 kb on + strand, within SMc01092at 467.442 kb on + strand, within SMc01092at 467.574 kb on - strand, within SMc01091at 467.574 kb on - strand, within SMc01091at 467.574 kb on - strand, within SMc01091at 467.574 kb on - strand, within SMc01091at 468.131 kb on + strand, within SMc01090at 468.131 kb on + strand, within SMc01090at 468.132 kb on - strand, within SMc01090at 468.942 kb on - strand, within SMc01090at 469.004 kb on + strand, within SMc01090at 469.068 kb on - strand, within SMc01090at 469.228 kb on + strand, within SMc01090at 469.231 kb on - strand, within SMc01090at 469.252 kb on - strand, within SMc01090at 469.374 kb on - strand, within SMc01090at 469.765 kb on + strandat 469.781 kb on + strandat 469.782 kb on - strandat 469.785 kb on + strandat 469.785 kb on + strandat 469.785 kb on + strandat 469.786 kb on - strandat 469.786 kb on - strandat 469.786 kb on - strandat 469.959 kb on - strand, within SMc01089

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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466,948 + SMc01092 0.33 -0.6
466,984 - SMc01092 0.37 -0.1
467,196 + SMc01092 0.61 +0.7
467,196 + SMc01092 0.61 -0.2
467,208 + SMc01092 0.63 -0.2
467,209 - SMc01092 0.63 +2.2
467,286 + SMc01092 0.71 +1.3
467,288 + SMc01092 0.72 +0.0
467,288 + SMc01092 0.72 -1.8
467,289 - SMc01092 0.72 +0.5
467,289 - SMc01092 0.72 +0.4
467,289 - SMc01092 0.72 -1.2
467,289 - SMc01092 0.72 -1.5
467,289 - SMc01092 0.72 +0.7
467,316 + SMc01092 0.75 -0.0
467,316 + SMc01092 0.75 +0.3
467,316 + SMc01092 0.75 +1.3
467,317 - SMc01092 0.75 -2.5
467,317 - SMc01092 0.75 -1.1
467,442 + SMc01092 0.89 +0.0
467,442 + SMc01092 0.89 +1.6
467,442 + SMc01092 0.89 +0.3
467,574 - SMc01091 0.16 -0.2
467,574 - SMc01091 0.16 -1.2
467,574 - SMc01091 0.16 +2.1
467,574 - SMc01091 0.16 -1.4
468,131 + SMc01090 0.19 -0.3
468,131 + SMc01090 0.19 -1.5
468,132 - SMc01090 0.19 -0.9
468,942 - SMc01090 0.62 -0.6
469,004 + SMc01090 0.65 -0.5
469,068 - SMc01090 0.68 -0.2
469,228 + SMc01090 0.77 +0.6
469,231 - SMc01090 0.77 +0.6
469,252 - SMc01090 0.78 -0.2
469,374 - SMc01090 0.85 -0.6
469,765 + +1.1
469,781 + +0.8
469,782 - +0.8
469,785 + -0.9
469,785 + +0.9
469,785 + -2.8
469,786 - +0.5
469,786 - +0.7
469,786 - +0.6
469,959 - SMc01089 0.36 +0.9

Or see this region's nucleotide sequence