Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00978 and SMc00977 are separated by 177 nucleotides SMc00977 and SMc00976 are separated by 9 nucleotides
SMc00978: SMc00978 - hypothetical protein, at 959,627 to 960,616
SMc00978
SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575
SMc00977
SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337
SMc00976
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 959.803 kb on + strand, within SMc00978 at 959.803 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.806 kb on - strand at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.938 kb on + strand, within SMc00978 at 959.939 kb on - strand, within SMc00978 at 960.081 kb on + strand, within SMc00978 at 960.096 kb on - strand, within SMc00978 at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.594 kb on - strand at 960.594 kb on - strand at 960.653 kb on - strand at 960.653 kb on - strand at 960.653 kb on - strand at 960.744 kb on + strand at 960.745 kb on - strand at 960.745 kb on - strand at 960.763 kb on + strand at 960.764 kb on - strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 961.349 kb on + strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.408 kb on + strand, within SMc00977 at 961.422 kb on + strand, within SMc00977 at 961.592 kb on + strand, within SMc00977 at 961.758 kb on - strand, within SMc00977 at 961.892 kb on + strand, within SMc00977 at 962.085 kb on - strand, within SMc00977 at 962.115 kb on - strand, within SMc00977 at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.621 kb on + strand at 962.687 kb on + strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 963.335 kb on + strand at 963.394 kb on + strand at 963.394 kb on + strand at 963.395 kb on - strand at 963.395 kb on - strand at 963.421 kb on - strand at 963.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 959,803 + SMc00978 0.18 +0.1 959,803 + SMc00978 0.18 -0.1 959,805 + SMc00978 0.18 -0.3 959,805 + SMc00978 0.18 +0.1 959,805 + SMc00978 0.18 -1.3 959,805 + SMc00978 0.18 -0.7 959,805 + SMc00978 0.18 +0.0 959,806 - +1.3 959,806 - SMc00978 0.18 +1.5 959,806 - SMc00978 0.18 -1.0 959,806 - SMc00978 0.18 -3.0 959,806 - SMc00978 0.18 +1.1 959,938 + SMc00978 0.31 +0.8 959,939 - SMc00978 0.32 -2.6 960,081 + SMc00978 0.46 +0.3 960,096 - SMc00978 0.47 -0.6 960,593 + +0.7 960,593 + -1.0 960,593 + +0.8 960,593 + +0.9 960,593 + +2.7 960,594 - +1.3 960,594 - -1.3 960,653 - -3.8 960,653 - -3.2 960,653 - -0.3 960,744 + +0.8 960,745 - -0.7 960,745 - -0.6 960,763 + +0.8 960,764 - +0.8 960,797 + +1.1 960,797 + -1.5 960,797 + -0.1 960,797 + -0.5 960,798 - -0.2 960,798 - +2.4 960,798 - -3.1 960,798 - -1.7 960,798 - +0.7 960,798 - +0.5 960,798 - -0.6 961,349 + SMc00977 0.31 +0.6 961,350 - SMc00977 0.31 -0.3 961,350 - SMc00977 0.31 +1.5 961,350 - SMc00977 0.31 +0.4 961,350 - SMc00977 0.31 +1.0 961,408 + SMc00977 0.34 -0.3 961,422 + SMc00977 0.35 +1.7 961,592 + SMc00977 0.45 +1.8 961,758 - SMc00977 0.54 +0.6 961,892 + SMc00977 0.62 -0.6 962,085 - SMc00977 0.72 -0.4 962,115 - SMc00977 0.74 -0.7 962,408 + -0.6 962,408 + -0.1 962,408 + +0.2 962,408 + +2.3 962,621 + -2.1 962,687 + SMc00976 0.14 -1.5 962,688 - SMc00976 0.14 -1.0 962,688 - SMc00976 0.14 +0.0 963,335 + -0.4 963,394 + -0.3 963,394 + -0.5 963,395 - +1.5 963,395 - +1.9 963,421 - -0.5 963,421 - -0.0
Or see this region's nucleotide sequence