Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00948 and SMc00949 are separated by 181 nucleotides SMc00949 and SMc00950 are separated by 156 nucleotides
SMc00948: SMc00948 - glutamine synthetase, at 1,774,760 to 1,776,169
SMc00948
SMc00949: SMc00949 - hypothetical protein, at 1,776,351 to 1,776,680
SMc00949
SMc00950: SMc00950 - signal peptide protein, at 1,776,837 to 1,777,466
SMc00950
Position (kb)
1776
1777 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1775.474 kb on + strand, within SMc00948 at 1775.474 kb on + strand, within SMc00948 at 1775.475 kb on - strand, within SMc00948 at 1775.475 kb on - strand, within SMc00948 at 1775.480 kb on + strand, within SMc00948 at 1775.481 kb on - strand, within SMc00948 at 1775.508 kb on - strand, within SMc00948 at 1775.649 kb on - strand, within SMc00948 at 1775.717 kb on + strand, within SMc00948 at 1775.717 kb on + strand, within SMc00948 at 1775.864 kb on + strand, within SMc00948 at 1775.951 kb on + strand, within SMc00948 at 1775.951 kb on + strand, within SMc00948 at 1775.952 kb on - strand, within SMc00948 at 1775.952 kb on - strand, within SMc00948 at 1775.952 kb on - strand, within SMc00948 at 1776.155 kb on + strand at 1776.155 kb on + strand at 1776.155 kb on + strand at 1776.156 kb on - strand at 1776.156 kb on - strand at 1776.156 kb on - strand at 1776.445 kb on - strand, within SMc00949 at 1776.513 kb on + strand, within SMc00949 at 1776.513 kb on + strand, within SMc00949 at 1776.513 kb on + strand, within SMc00949 at 1776.514 kb on - strand, within SMc00949 at 1776.514 kb on - strand, within SMc00949 at 1776.546 kb on + strand, within SMc00949 at 1776.556 kb on - strand, within SMc00949 at 1776.651 kb on + strand at 1776.669 kb on + strand at 1776.670 kb on - strand at 1776.670 kb on - strand at 1776.678 kb on + strand at 1776.679 kb on - strand at 1776.819 kb on - strand at 1776.831 kb on + strand at 1777.561 kb on - strand at 1777.590 kb on - strand at 1777.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,775,474 + SMc00948 0.51 -2.6 1,775,474 + SMc00948 0.51 -0.9 1,775,475 - SMc00948 0.51 -2.9 1,775,475 - SMc00948 0.51 -1.8 1,775,480 + SMc00948 0.51 +0.6 1,775,481 - SMc00948 0.51 -1.8 1,775,508 - SMc00948 0.53 +0.7 1,775,649 - SMc00948 0.63 -1.8 1,775,717 + SMc00948 0.68 +1.0 1,775,717 + SMc00948 0.68 -1.9 1,775,864 + SMc00948 0.78 +0.4 1,775,951 + SMc00948 0.84 +0.7 1,775,951 + SMc00948 0.84 -2.2 1,775,952 - SMc00948 0.85 -2.8 1,775,952 - SMc00948 0.85 -2.3 1,775,952 - SMc00948 0.85 -0.6 1,776,155 + -2.2 1,776,155 + +2.3 1,776,155 + -2.7 1,776,156 - -0.8 1,776,156 - -0.4 1,776,156 - -1.4 1,776,445 - SMc00949 0.28 -0.5 1,776,513 + SMc00949 0.49 +0.7 1,776,513 + SMc00949 0.49 +0.4 1,776,513 + SMc00949 0.49 +0.4 1,776,514 - SMc00949 0.49 -1.8 1,776,514 - SMc00949 0.49 -0.8 1,776,546 + SMc00949 0.59 -2.1 1,776,556 - SMc00949 0.62 -0.6 1,776,651 + -1.4 1,776,669 + -0.8 1,776,670 - -0.3 1,776,670 - -0.3 1,776,678 + -0.5 1,776,679 - -0.8 1,776,819 - +1.0 1,776,831 + +0.9 1,777,561 - -0.7 1,777,590 - +0.5 1,777,590 - +0.7
Or see this region's nucleotide sequence