Strain Fitness in Sinorhizobium meliloti 1021 around SMc00949

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00948 and SMc00949 are separated by 181 nucleotidesSMc00949 and SMc00950 are separated by 156 nucleotides SMc00948: SMc00948 - glutamine synthetase, at 1,774,760 to 1,776,169 SMc00948 SMc00949: SMc00949 - hypothetical protein, at 1,776,351 to 1,776,680 SMc00949 SMc00950: SMc00950 - signal peptide protein, at 1,776,837 to 1,777,466 SMc00950 Position (kb) 1776 1777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1775.474 kb on + strand, within SMc00948at 1775.474 kb on + strand, within SMc00948at 1775.475 kb on - strand, within SMc00948at 1775.475 kb on - strand, within SMc00948at 1775.480 kb on + strand, within SMc00948at 1775.481 kb on - strand, within SMc00948at 1775.508 kb on - strand, within SMc00948at 1775.649 kb on - strand, within SMc00948at 1775.717 kb on + strand, within SMc00948at 1775.717 kb on + strand, within SMc00948at 1775.864 kb on + strand, within SMc00948at 1775.951 kb on + strand, within SMc00948at 1775.951 kb on + strand, within SMc00948at 1775.952 kb on - strand, within SMc00948at 1775.952 kb on - strand, within SMc00948at 1775.952 kb on - strand, within SMc00948at 1776.155 kb on + strandat 1776.155 kb on + strandat 1776.155 kb on + strandat 1776.156 kb on - strandat 1776.156 kb on - strandat 1776.156 kb on - strandat 1776.445 kb on - strand, within SMc00949at 1776.513 kb on + strand, within SMc00949at 1776.513 kb on + strand, within SMc00949at 1776.513 kb on + strand, within SMc00949at 1776.514 kb on - strand, within SMc00949at 1776.514 kb on - strand, within SMc00949at 1776.546 kb on + strand, within SMc00949at 1776.556 kb on - strand, within SMc00949at 1776.651 kb on + strandat 1776.669 kb on + strandat 1776.670 kb on - strandat 1776.670 kb on - strandat 1776.678 kb on + strandat 1776.679 kb on - strandat 1776.819 kb on - strandat 1776.831 kb on + strandat 1777.561 kb on - strandat 1777.590 kb on - strandat 1777.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,775,474 + SMc00948 0.51 -2.6
1,775,474 + SMc00948 0.51 -0.9
1,775,475 - SMc00948 0.51 -2.9
1,775,475 - SMc00948 0.51 -1.8
1,775,480 + SMc00948 0.51 +0.6
1,775,481 - SMc00948 0.51 -1.8
1,775,508 - SMc00948 0.53 +0.7
1,775,649 - SMc00948 0.63 -1.8
1,775,717 + SMc00948 0.68 +1.0
1,775,717 + SMc00948 0.68 -1.9
1,775,864 + SMc00948 0.78 +0.4
1,775,951 + SMc00948 0.84 +0.7
1,775,951 + SMc00948 0.84 -2.2
1,775,952 - SMc00948 0.85 -2.8
1,775,952 - SMc00948 0.85 -2.3
1,775,952 - SMc00948 0.85 -0.6
1,776,155 + -2.2
1,776,155 + +2.3
1,776,155 + -2.7
1,776,156 - -0.8
1,776,156 - -0.4
1,776,156 - -1.4
1,776,445 - SMc00949 0.28 -0.5
1,776,513 + SMc00949 0.49 +0.7
1,776,513 + SMc00949 0.49 +0.4
1,776,513 + SMc00949 0.49 +0.4
1,776,514 - SMc00949 0.49 -1.8
1,776,514 - SMc00949 0.49 -0.8
1,776,546 + SMc00949 0.59 -2.1
1,776,556 - SMc00949 0.62 -0.6
1,776,651 + -1.4
1,776,669 + -0.8
1,776,670 - -0.3
1,776,670 - -0.3
1,776,678 + -0.5
1,776,679 - -0.8
1,776,819 - +1.0
1,776,831 + +0.9
1,777,561 - -0.7
1,777,590 - +0.5
1,777,590 - +0.7

Or see this region's nucleotide sequence