Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00924 and SMc00923 are separated by 285 nucleotides SMc00923 and SMc00922 are separated by 74 nucleotides SMc00922 and SMc00921 are separated by 189 nucleotides SMc00921 and SMc00931 are separated by 73 nucleotides
SMc00924: SMc00924 - hypothetical protein, at 858,648 to 859,388
SMc00924
SMc00923: SMc00923 - DNA-3-methyladenine DNA glycosylase, at 859,674 to 860,309
SMc00923
SMc00922: SMc00922 - transporter transmembrane protein, at 860,384 to 861,841
SMc00922
SMc00921: SMc00921 - signal peptide protein, at 862,031 to 862,417
SMc00921
SMc00931: SMc00931 - hypothetical protein, at 862,491 to 862,916
SMc00931
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.402 kb on + strand at 859.586 kb on - strand at 859.603 kb on + strand at 859.603 kb on + strand at 859.604 kb on - strand at 859.746 kb on + strand, within SMc00923 at 859.756 kb on - strand, within SMc00923 at 859.987 kb on + strand, within SMc00923 at 859.988 kb on - strand, within SMc00923 at 860.052 kb on + strand, within SMc00923 at 860.053 kb on - strand, within SMc00923 at 860.377 kb on + strand at 860.433 kb on + strand at 860.434 kb on - strand at 860.436 kb on + strand at 860.436 kb on + strand at 860.437 kb on - strand at 860.437 kb on - strand at 860.437 kb on - strand at 860.438 kb on + strand at 860.438 kb on + strand at 860.439 kb on - strand at 860.439 kb on - strand at 860.439 kb on - strand at 860.439 kb on - strand at 860.506 kb on + strand at 860.506 kb on + strand at 860.507 kb on - strand at 860.507 kb on - strand at 860.507 kb on - strand at 860.507 kb on - strand at 860.507 kb on - strand at 860.646 kb on + strand, within SMc00922 at 860.646 kb on + strand, within SMc00922 at 860.647 kb on - strand, within SMc00922 at 860.649 kb on + strand, within SMc00922 at 860.649 kb on + strand, within SMc00922 at 860.650 kb on - strand, within SMc00922 at 860.689 kb on + strand, within SMc00922 at 860.690 kb on - strand, within SMc00922 at 860.742 kb on + strand, within SMc00922 at 860.742 kb on + strand, within SMc00922 at 860.772 kb on + strand, within SMc00922 at 860.772 kb on + strand, within SMc00922 at 860.772 kb on + strand at 860.773 kb on - strand, within SMc00922 at 860.773 kb on - strand, within SMc00922 at 860.773 kb on - strand, within SMc00922 at 860.958 kb on + strand, within SMc00922 at 861.069 kb on + strand, within SMc00922 at 861.111 kb on + strand, within SMc00922 at 861.112 kb on - strand, within SMc00922 at 861.255 kb on + strand, within SMc00922 at 861.255 kb on + strand, within SMc00922 at 861.373 kb on - strand, within SMc00922 at 861.373 kb on - strand, within SMc00922 at 861.495 kb on + strand, within SMc00922 at 861.712 kb on - strand at 861.712 kb on - strand at 861.712 kb on - strand at 861.712 kb on - strand at 861.715 kb on - strand at 861.807 kb on + strand at 861.808 kb on - strand at 861.834 kb on - strand at 862.022 kb on - strand at 862.032 kb on + strand at 862.033 kb on - strand at 862.418 kb on - strand at 862.562 kb on + strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.670 kb on + strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.703 kb on - strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 859,402 + +1.1 859,586 - +0.7 859,603 + +0.4 859,603 + -0.2 859,604 - +1.0 859,746 + SMc00923 0.11 +0.6 859,756 - SMc00923 0.13 +0.3 859,987 + SMc00923 0.49 +0.4 859,988 - SMc00923 0.49 -0.2 860,052 + SMc00923 0.59 +0.9 860,053 - SMc00923 0.60 +0.5 860,377 + -0.4 860,433 + +0.6 860,434 - -0.4 860,436 + -0.4 860,436 + +0.8 860,437 - +0.5 860,437 - +0.9 860,437 - -2.3 860,438 + -0.1 860,438 + +0.1 860,439 - +0.3 860,439 - -3.1 860,439 - -0.7 860,439 - -3.5 860,506 + +0.9 860,506 + +0.8 860,507 - -1.9 860,507 - +0.4 860,507 - -2.1 860,507 - -0.3 860,507 - +0.7 860,646 + SMc00922 0.18 +0.3 860,646 + SMc00922 0.18 +1.2 860,647 - SMc00922 0.18 -0.8 860,649 + SMc00922 0.18 -3.3 860,649 + SMc00922 0.18 +0.7 860,650 - SMc00922 0.18 -0.9 860,689 + SMc00922 0.21 -0.4 860,690 - SMc00922 0.21 -0.5 860,742 + SMc00922 0.25 -0.5 860,742 + SMc00922 0.25 -1.0 860,772 + SMc00922 0.27 +0.4 860,772 + SMc00922 0.27 +0.5 860,772 + -1.0 860,773 - SMc00922 0.27 -0.2 860,773 - SMc00922 0.27 +0.3 860,773 - SMc00922 0.27 -2.1 860,958 + SMc00922 0.39 -1.3 861,069 + SMc00922 0.47 -0.9 861,111 + SMc00922 0.50 +0.4 861,112 - SMc00922 0.50 -0.1 861,255 + SMc00922 0.60 -0.2 861,255 + SMc00922 0.60 +0.9 861,373 - SMc00922 0.68 -0.7 861,373 - SMc00922 0.68 -0.3 861,495 + SMc00922 0.76 -0.3 861,712 - +0.1 861,712 - +1.3 861,712 - +1.9 861,712 - +0.0 861,715 - -2.5 861,807 + -0.6 861,808 - -1.0 861,834 - -0.4 862,022 - -1.3 862,032 + +0.3 862,033 - +0.2 862,418 - -1.3 862,562 + SMc00931 0.17 +1.2 862,563 - SMc00931 0.17 +1.0 862,563 - SMc00931 0.17 +1.1 862,670 + SMc00931 0.42 +0.4 862,671 - SMc00931 0.42 -0.5 862,671 - SMc00931 0.42 -0.3 862,703 - SMc00931 0.50 -0.4 862,773 + SMc00931 0.66 +1.7 862,773 + SMc00931 0.66 -1.1 862,774 - SMc00931 0.66 +1.2 862,774 - SMc00931 0.66 -0.7 862,774 - SMc00931 0.66 +0.1
Or see this region's nucleotide sequence