Strain Fitness in Sinorhizobium meliloti 1021 around SMc00869

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00871 and SMc00870 are separated by 84 nucleotidesSMc00870 and SMc00869 are separated by 73 nucleotidesSMc00869 and SMc00868 are separated by 13 nucleotidesSMc00868 and SMc00867 are separated by 390 nucleotides SMc00871: SMc00871 - F0F1 ATP synthase subunit A, at 916,938 to 917,690 SMc00871 SMc00870: SMc00870 - F0F1 ATP synthase subunit C, at 917,775 to 918,002 SMc00870 SMc00869: SMc00869 - F0F1 ATP synthase subunit B', at 918,076 to 918,690 SMc00869 SMc00868: SMc00868 - F0F1 ATP synthase subunit B, at 918,704 to 919,189 SMc00868 SMc00867: SMc00867 - ribonuclease HII, at 919,580 to 920,230 SMc00867 Position (kb) 918 919Strain fitness (log2 ratio) -2 -1 0 1at 917.688 kb on + strandat 919.188 kb on - strandat 919.194 kb on - strandat 919.204 kb on - strandat 919.272 kb on + strandat 919.273 kb on - strandat 919.345 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.467 kb on + strandat 919.468 kb on - strandat 919.468 kb on - strandat 919.468 kb on - strandat 919.468 kb on - strandat 919.468 kb on - strandat 919.469 kb on + strandat 919.469 kb on + strandat 919.469 kb on + strandat 919.469 kb on + strandat 919.470 kb on - strandat 919.470 kb on - strandat 919.500 kb on + strandat 919.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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917,688 + +1.6
919,188 - -0.8
919,194 - -0.4
919,204 - +0.6
919,272 + +1.4
919,273 - +0.6
919,345 + +0.6
919,467 + +0.1
919,467 + -0.8
919,467 + -2.2
919,467 + +0.4
919,467 + -0.4
919,467 + -0.7
919,467 + +0.6
919,468 - -1.6
919,468 - -0.0
919,468 - +0.2
919,468 - +1.2
919,468 - -0.3
919,469 + +1.1
919,469 + -0.3
919,469 + -1.8
919,469 + -1.5
919,470 - -0.7
919,470 - -0.1
919,500 + -0.7
919,500 + -2.5

Or see this region's nucleotide sequence