Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00819 and SMc00820 are separated by 83 nucleotides SMc00820 and SMc00821 are separated by 210 nucleotides SMc00821 and SMc00822 are separated by 278 nucleotides
SMc00819: SMc00819 - catalase hydroperoxidase HPII(III) protein, at 840,311 to 841,795
SMc00819
SMc00820: SMc00820 - transcriptional regulator, at 841,879 to 842,829
SMc00820
SMc00821: SMc00821 - hypothetical protein, at 843,040 to 843,336
SMc00821
SMc00822: SMc00822 - hypothetical protein, at 843,615 to 843,911
SMc00822
Position (kb) 841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 840.880 kb on + strand, within SMc00819 at 840.881 kb on - strand, within SMc00819 at 840.881 kb on - strand, within SMc00819 at 840.881 kb on - strand, within SMc00819 at 840.884 kb on + strand, within SMc00819 at 840.891 kb on - strand, within SMc00819 at 840.905 kb on + strand, within SMc00819 at 840.906 kb on - strand, within SMc00819 at 840.935 kb on + strand, within SMc00819 at 840.936 kb on - strand, within SMc00819 at 840.936 kb on - strand, within SMc00819 at 840.936 kb on - strand, within SMc00819 at 840.973 kb on + strand, within SMc00819 at 840.973 kb on + strand, within SMc00819 at 840.974 kb on - strand, within SMc00819 at 840.974 kb on - strand, within SMc00819 at 841.028 kb on + strand, within SMc00819 at 841.028 kb on + strand, within SMc00819 at 841.044 kb on + strand, within SMc00819 at 841.046 kb on + strand, within SMc00819 at 841.047 kb on - strand, within SMc00819 at 841.127 kb on + strand, within SMc00819 at 841.128 kb on - strand, within SMc00819 at 841.128 kb on - strand, within SMc00819 at 841.128 kb on - strand, within SMc00819 at 841.170 kb on - strand, within SMc00819 at 841.220 kb on + strand, within SMc00819 at 841.261 kb on + strand, within SMc00819 at 841.261 kb on + strand, within SMc00819 at 841.355 kb on + strand, within SMc00819 at 841.356 kb on - strand, within SMc00819 at 841.528 kb on - strand, within SMc00819 at 841.547 kb on + strand, within SMc00819 at 841.547 kb on + strand, within SMc00819 at 841.547 kb on + strand, within SMc00819 at 841.574 kb on + strand, within SMc00819 at 841.794 kb on - strand at 841.870 kb on + strand at 841.896 kb on + strand at 841.896 kb on + strand at 841.896 kb on + strand at 841.897 kb on - strand at 841.897 kb on - strand at 841.897 kb on - strand at 841.897 kb on - strand at 841.897 kb on - strand at 841.999 kb on - strand, within SMc00820 at 842.210 kb on + strand, within SMc00820 at 842.210 kb on + strand, within SMc00820 at 842.456 kb on + strand, within SMc00820 at 842.456 kb on + strand, within SMc00820 at 842.456 kb on + strand, within SMc00820 at 842.456 kb on + strand, within SMc00820 at 842.456 kb on + strand, within SMc00820 at 842.457 kb on - strand, within SMc00820 at 842.457 kb on - strand, within SMc00820 at 842.457 kb on - strand, within SMc00820 at 842.510 kb on + strand, within SMc00820 at 842.522 kb on + strand, within SMc00820 at 842.788 kb on + strand at 842.839 kb on - strand at 842.843 kb on - strand at 842.844 kb on + strand at 842.844 kb on + strand at 842.844 kb on + strand at 842.845 kb on - strand at 842.845 kb on - strand at 842.944 kb on + strand at 843.275 kb on - strand, within SMc00821 at 843.275 kb on - strand, within SMc00821 at 843.313 kb on + strand at 843.314 kb on - strand at 843.465 kb on - strand at 843.465 kb on - strand at 843.465 kb on - strand at 843.474 kb on + strand at 843.475 kb on - strand at 843.475 kb on - strand at 843.475 kb on - strand at 843.495 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.512 kb on - strand at 843.546 kb on - strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.577 kb on + strand at 843.796 kb on + strand, within SMc00822 at 843.796 kb on + strand, within SMc00822 at 843.796 kb on + strand, within SMc00822 at 843.797 kb on - strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.811 kb on - strand, within SMc00822
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 840,880 + SMc00819 0.38 -0.2 840,881 - SMc00819 0.38 +2.3 840,881 - SMc00819 0.38 -1.0 840,881 - SMc00819 0.38 -0.3 840,884 + SMc00819 0.39 +1.0 840,891 - SMc00819 0.39 -0.1 840,905 + SMc00819 0.40 -1.9 840,906 - SMc00819 0.40 +0.6 840,935 + SMc00819 0.42 +0.0 840,936 - SMc00819 0.42 +0.9 840,936 - SMc00819 0.42 +0.6 840,936 - SMc00819 0.42 -0.3 840,973 + SMc00819 0.45 -1.5 840,973 + SMc00819 0.45 -1.5 840,974 - SMc00819 0.45 +1.7 840,974 - SMc00819 0.45 +0.9 841,028 + SMc00819 0.48 +0.6 841,028 + SMc00819 0.48 +0.9 841,044 + SMc00819 0.49 +0.7 841,046 + SMc00819 0.49 +0.5 841,047 - SMc00819 0.50 +0.2 841,127 + SMc00819 0.55 +1.1 841,128 - SMc00819 0.55 -0.9 841,128 - SMc00819 0.55 +0.8 841,128 - SMc00819 0.55 +1.2 841,170 - SMc00819 0.58 -0.7 841,220 + SMc00819 0.61 +2.0 841,261 + SMc00819 0.64 -1.7 841,261 + SMc00819 0.64 -1.3 841,355 + SMc00819 0.70 +2.8 841,356 - SMc00819 0.70 -1.5 841,528 - SMc00819 0.82 +1.6 841,547 + SMc00819 0.83 +0.2 841,547 + SMc00819 0.83 +1.3 841,547 + SMc00819 0.83 -2.9 841,574 + SMc00819 0.85 -2.4 841,794 - +0.6 841,870 + +1.1 841,896 + -0.3 841,896 + -0.1 841,896 + -1.4 841,897 - -0.8 841,897 - -0.1 841,897 - +2.3 841,897 - -1.6 841,897 - -0.7 841,999 - SMc00820 0.13 -0.1 842,210 + SMc00820 0.35 -1.8 842,210 + SMc00820 0.35 -2.3 842,456 + SMc00820 0.61 -2.1 842,456 + SMc00820 0.61 -0.2 842,456 + SMc00820 0.61 -0.4 842,456 + SMc00820 0.61 -0.1 842,456 + SMc00820 0.61 +0.6 842,457 - SMc00820 0.61 +0.4 842,457 - SMc00820 0.61 -0.2 842,457 - SMc00820 0.61 -2.1 842,510 + SMc00820 0.66 -0.8 842,522 + SMc00820 0.68 -3.2 842,788 + +1.8 842,839 - +1.5 842,843 - +0.1 842,844 + -2.0 842,844 + -1.3 842,844 + -0.8 842,845 - -2.9 842,845 - +1.1 842,944 + -2.6 843,275 - SMc00821 0.79 -1.1 843,275 - SMc00821 0.79 +1.0 843,313 + -1.5 843,314 - -0.0 843,465 - +0.1 843,465 - +0.7 843,465 - -0.3 843,474 + +0.9 843,475 - -2.8 843,475 - +0.1 843,475 - +1.3 843,495 + -0.7 843,511 + +0.1 843,511 + +0.3 843,511 + +2.0 843,511 + +0.1 843,512 - -1.1 843,546 - -0.9 843,574 + +1.5 843,574 + -0.5 843,574 + +1.7 843,574 + -0.5 843,575 - -3.5 843,575 - -0.8 843,575 - +0.2 843,575 - -1.1 843,575 - +0.0 843,577 + -1.1 843,796 + SMc00822 0.61 -0.2 843,796 + SMc00822 0.61 +1.0 843,796 + SMc00822 0.61 -0.5 843,797 - SMc00822 0.61 -3.3 843,806 + SMc00822 0.64 -1.9 843,806 + SMc00822 0.64 +0.5 843,806 + SMc00822 0.64 +0.1 843,811 - SMc00822 0.66 +1.7
Or see this region's nucleotide sequence