Strain Fitness in Sinorhizobium meliloti 1021 around SMc00648

Experiment: Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00649 and SMc00648 are separated by 4 nucleotidesSMc00648 and SMc00647 are separated by 29 nucleotides SMc00649: SMc00649 - tRNA/rRNA methyltransferase, at 2,926,861 to 2,927,688 SMc00649 SMc00648: SMc00648 - hypothetical protein, at 2,927,693 to 2,928,076 SMc00648 SMc00647: SMc00647 - ribosomal large subunit pseudouridine synthase, at 2,928,106 to 2,929,137 SMc00647 Position (kb) 2927 2928 2929Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2926.901 kb on - strandat 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.287 kb on + strand, within SMc00649at 2927.323 kb on + strand, within SMc00649at 2927.324 kb on - strand, within SMc00649at 2927.438 kb on + strand, within SMc00649at 2927.439 kb on - strand, within SMc00649at 2927.439 kb on - strand, within SMc00649at 2927.858 kb on + strand, within SMc00648at 2927.859 kb on - strand, within SMc00648at 2927.931 kb on + strand, within SMc00648at 2927.956 kb on + strand, within SMc00648at 2927.956 kb on + strand, within SMc00648at 2928.120 kb on + strandat 2928.877 kb on - strand, within SMc00647at 2928.938 kb on - strand, within SMc00647

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
remove
2,926,901 - -1.3
2,927,192 + SMc00649 0.40 +1.9
2,927,192 + SMc00649 0.40 -0.2
2,927,192 + SMc00649 0.40 +0.6
2,927,271 + SMc00649 0.50 +1.2
2,927,271 + SMc00649 0.50 -0.7
2,927,287 + SMc00649 0.51 +1.4
2,927,323 + SMc00649 0.56 -1.4
2,927,324 - SMc00649 0.56 -4.0
2,927,438 + SMc00649 0.70 -0.3
2,927,439 - SMc00649 0.70 +1.4
2,927,439 - SMc00649 0.70 -0.3
2,927,858 + SMc00648 0.43 +1.7
2,927,859 - SMc00648 0.43 +0.9
2,927,931 + SMc00648 0.62 +0.7
2,927,956 + SMc00648 0.68 +1.5
2,927,956 + SMc00648 0.68 +1.5
2,928,120 + +2.8
2,928,877 - SMc00647 0.75 +3.6
2,928,938 - SMc00647 0.81 +3.4

Or see this region's nucleotide sequence