Strain Fitness in Sinorhizobium meliloti 1021 around SMc00586

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00585 and SMc00586 are separated by 19 nucleotidesSMc00586 and SMc05005 are separated by 226 nucleotides SMc00585: SMc00585 - leucyl aminopeptidase, at 1,256,168 to 1,257,661 SMc00585 SMc00586: SMc00586 - DNA polymerase III subunit chi, at 1,257,681 to 1,258,130 SMc00586 SMc05005: SMc05005 - transposase, at 1,258,357 to 1,259,349 SMc05005 Position (kb) 1257 1258 1259Strain fitness (log2 ratio) -3 -2 -1 0 1at 1256.748 kb on + strand, within SMc00585at 1257.025 kb on + strand, within SMc00585at 1257.256 kb on + strand, within SMc00585at 1257.256 kb on + strand, within SMc00585at 1257.323 kb on + strand, within SMc00585at 1257.425 kb on + strand, within SMc00585at 1257.425 kb on + strand, within SMc00585at 1257.650 kb on + strandat 1258.278 kb on - strandat 1258.394 kb on + strandat 1258.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,256,748 + SMc00585 0.39 +0.4
1,257,025 + SMc00585 0.57 -1.1
1,257,256 + SMc00585 0.73 +1.5
1,257,256 + SMc00585 0.73 -0.5
1,257,323 + SMc00585 0.77 -0.7
1,257,425 + SMc00585 0.84 -1.8
1,257,425 + SMc00585 0.84 +0.3
1,257,650 + +0.2
1,258,278 - -0.5
1,258,394 + +1.2
1,258,400 + -3.3

Or see this region's nucleotide sequence