Strain Fitness in Sinorhizobium meliloti 1021 around SMc00561

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00559 and SMc00560 overlap by 4 nucleotidesSMc00560 and SMc00561 are separated by 151 nucleotidesSMc00561 and SMc00562 are separated by 321 nucleotidesSMc00562 and SMc00563 overlap by 4 nucleotides SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460 SMc00559 SMc00560: SMc00560 - hypothetical protein, at 1,230,457 to 1,230,759 SMc00560 SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410 SMc00561 SMc00562: SMc00562 - transcriptional regulator, at 1,232,732 to 1,233,184 SMc00562 SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776 SMc00563 Position (kb) 1230 1231 1232 1233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1230.071 kb on + strand, within SMc00559at 1230.072 kb on - strand, within SMc00559at 1230.072 kb on - strand, within SMc00559at 1230.155 kb on + strand, within SMc00559at 1230.180 kb on - strand, within SMc00559at 1230.180 kb on - strand, within SMc00559at 1230.386 kb on + strandat 1230.387 kb on - strandat 1230.387 kb on - strandat 1230.558 kb on - strand, within SMc00560at 1230.558 kb on - strand, within SMc00560at 1230.757 kb on + strandat 1230.922 kb on - strandat 1232.429 kb on - strandat 1232.504 kb on + strandat 1232.504 kb on + strandat 1232.505 kb on - strandat 1232.577 kb on + strandat 1232.617 kb on + strandat 1232.618 kb on - strandat 1232.623 kb on + strandat 1232.682 kb on + strandat 1232.686 kb on + strandat 1232.686 kb on + strandat 1232.710 kb on - strandat 1232.729 kb on + strandat 1233.232 kb on + strandat 1233.233 kb on - strandat 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.362 kb on - strand, within SMc00563

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,230,071 + SMc00559 0.49 -0.7
1,230,072 - SMc00559 0.50 -2.6
1,230,072 - SMc00559 0.50 -0.3
1,230,155 + SMc00559 0.60 -0.1
1,230,180 - SMc00559 0.64 +0.8
1,230,180 - SMc00559 0.64 +1.6
1,230,386 + +0.7
1,230,387 - +0.2
1,230,387 - +0.5
1,230,558 - SMc00560 0.33 +0.9
1,230,558 - SMc00560 0.33 -1.0
1,230,757 + -0.8
1,230,922 - +1.2
1,232,429 - +0.1
1,232,504 + -1.8
1,232,504 + +0.2
1,232,505 - -0.5
1,232,577 + -1.5
1,232,617 + -0.9
1,232,618 - +0.5
1,232,623 + -1.5
1,232,682 + -0.1
1,232,686 + -0.8
1,232,686 + -2.5
1,232,710 - -0.8
1,232,729 + +1.6
1,233,232 + +3.0
1,233,233 - -1.0
1,233,361 + SMc00563 0.11 +0.0
1,233,361 + SMc00563 0.11 -0.6
1,233,361 + SMc00563 0.11 +0.7
1,233,361 + SMc00563 0.11 +1.8
1,233,362 - SMc00563 0.11 +0.5

Or see this region's nucleotide sequence