Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00559 and SMc00560 overlap by 4 nucleotides SMc00560 and SMc00561 are separated by 151 nucleotides SMc00561 and SMc00562 are separated by 321 nucleotides SMc00562 and SMc00563 overlap by 4 nucleotides
SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460
SMc00559
SMc00560: SMc00560 - hypothetical protein, at 1,230,457 to 1,230,759
SMc00560
SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410
SMc00561
SMc00562: SMc00562 - transcriptional regulator, at 1,232,732 to 1,233,184
SMc00562
SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776
SMc00563
Position (kb)
1230
1231
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1230.071 kb on + strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.155 kb on + strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.386 kb on + strand at 1230.387 kb on - strand at 1230.387 kb on - strand at 1230.558 kb on - strand, within SMc00560 at 1230.558 kb on - strand, within SMc00560 at 1230.757 kb on + strand at 1230.922 kb on - strand at 1232.429 kb on - strand at 1232.504 kb on + strand at 1232.504 kb on + strand at 1232.505 kb on - strand at 1232.577 kb on + strand at 1232.617 kb on + strand at 1232.618 kb on - strand at 1232.623 kb on + strand at 1232.682 kb on + strand at 1232.686 kb on + strand at 1232.686 kb on + strand at 1232.710 kb on - strand at 1232.729 kb on + strand at 1233.232 kb on + strand at 1233.233 kb on - strand at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.362 kb on - strand, within SMc00563
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,230,071 + SMc00559 0.49 -0.7 1,230,072 - SMc00559 0.50 -2.6 1,230,072 - SMc00559 0.50 -0.3 1,230,155 + SMc00559 0.60 -0.1 1,230,180 - SMc00559 0.64 +0.8 1,230,180 - SMc00559 0.64 +1.6 1,230,386 + +0.7 1,230,387 - +0.2 1,230,387 - +0.5 1,230,558 - SMc00560 0.33 +0.9 1,230,558 - SMc00560 0.33 -1.0 1,230,757 + -0.8 1,230,922 - +1.2 1,232,429 - +0.1 1,232,504 + -1.8 1,232,504 + +0.2 1,232,505 - -0.5 1,232,577 + -1.5 1,232,617 + -0.9 1,232,618 - +0.5 1,232,623 + -1.5 1,232,682 + -0.1 1,232,686 + -0.8 1,232,686 + -2.5 1,232,710 - -0.8 1,232,729 + +1.6 1,233,232 + +3.0 1,233,233 - -1.0 1,233,361 + SMc00563 0.11 +0.0 1,233,361 + SMc00563 0.11 -0.6 1,233,361 + SMc00563 0.11 +0.7 1,233,361 + SMc00563 0.11 +1.8 1,233,362 - SMc00563 0.11 +0.5
Or see this region's nucleotide sequence