Strain Fitness in Sinorhizobium meliloti 1021 around SMc00325

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00324 and SMc00325 are separated by 79 nucleotidesSMc00325 and SMc00326 are separated by 222 nucleotides SMc00324: SMc00324 - polynucleotide phosphorylase/polyadenylase, at 277,323 to 279,476 SMc00324 SMc00325: SMc00325 - hypothetical protein, at 279,556 to 280,572 SMc00325 SMc00326: SMc00326 - enoyl-ACP reductase, at 280,795 to 281,601 SMc00326 Position (kb) 279 280 281Strain fitness (log2 ratio) -1 0 1 2at 279.636 kb on - strandat 279.662 kb on - strand, within SMc00325at 279.662 kb on - strand, within SMc00325at 280.306 kb on + strand, within SMc00325at 280.345 kb on + strandat 280.353 kb on + strand, within SMc00325at 280.354 kb on - strand, within SMc00325at 280.486 kb on + strandat 280.590 kb on - strandat 280.633 kb on - strandat 280.718 kb on + strandat 280.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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279,636 - +1.1
279,662 - SMc00325 0.10 +0.5
279,662 - SMc00325 0.10 +0.4
280,306 + SMc00325 0.74 +1.0
280,345 + +0.4
280,353 + SMc00325 0.78 +0.9
280,354 - SMc00325 0.78 +1.5
280,486 + +1.6
280,590 - +2.0
280,633 - -1.5
280,718 + -0.7
280,796 + +1.0

Or see this region's nucleotide sequence