Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00291 and SMc00304 are separated by 161 nucleotides SMc00304 and SMc00305 are separated by 350 nucleotides SMc00305 and SMc00306 are separated by 181 nucleotides SMc00306 and SMc00292 are separated by 73 nucleotides SMc00292 and SMc00293 are separated by 129 nucleotides
SMc00291: SMc00291 - lipoprotein, at 1,860,627 to 1,861,946
SMc00291
SMc00304: SMc00304 - tRNA-Glu, at 1,862,108 to 1,862,183
SMc00304
SMc00305: SMc00305 - tRNA-Glu, at 1,862,534 to 1,862,608
SMc00305
SMc00306: SMc00306 - tRNA-Glu, at 1,862,790 to 1,862,865
SMc00306
SMc00292: SMc00292 - single-stranded-DNA-specific exonuclease, at 1,862,939 to 1,864,741
SMc00292
SMc00293: SMc00293 - homoserine dehydrogenase, at 1,864,871 to 1,866,193
SMc00293
Position (kb)
1862
1863
1864
1865 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1861.958 kb on + strand at 1861.959 kb on - strand at 1862.045 kb on + strand at 1862.046 kb on - strand at 1862.046 kb on - strand at 1862.048 kb on - strand at 1862.063 kb on - strand at 1862.195 kb on + strand at 1862.195 kb on + strand at 1862.197 kb on + strand at 1862.198 kb on - strand at 1862.198 kb on - strand at 1862.198 kb on - strand at 1862.208 kb on - strand at 1862.253 kb on + strand at 1862.253 kb on + strand at 1862.338 kb on + strand at 1862.339 kb on - strand at 1862.339 kb on - strand at 1862.356 kb on - strand at 1862.382 kb on - strand at 1862.382 kb on - strand at 1862.382 kb on - strand at 1862.510 kb on + strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.732 kb on + strand at 1862.732 kb on + strand at 1862.734 kb on + strand at 1862.735 kb on - strand at 1862.735 kb on - strand at 1862.735 kb on - strand at 1862.896 kb on + strand at 1862.944 kb on + strand at 1864.924 kb on - strand at 1865.022 kb on + strand, within SMc00293 at 1865.022 kb on + strand, within SMc00293 at 1865.023 kb on - strand, within SMc00293 at 1865.023 kb on - strand, within SMc00293 at 1865.133 kb on + strand, within SMc00293 at 1865.133 kb on + strand, within SMc00293 at 1865.167 kb on + strand, within SMc00293 at 1865.168 kb on - strand, within SMc00293 at 1865.168 kb on - strand, within SMc00293 at 1865.168 kb on - strand, within SMc00293 at 1865.170 kb on - strand, within SMc00293 at 1865.170 kb on - strand, within SMc00293 at 1865.411 kb on + strand, within SMc00293 at 1865.412 kb on - strand, within SMc00293 at 1865.483 kb on - strand, within SMc00293 at 1865.517 kb on + strand, within SMc00293 at 1865.518 kb on - strand, within SMc00293 at 1865.518 kb on - strand, within SMc00293 at 1865.698 kb on - strand, within SMc00293
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,861,958 + -0.8 1,861,959 - -1.2 1,862,045 + +0.0 1,862,046 - -0.5 1,862,046 - -2.4 1,862,048 - -0.3 1,862,063 - +2.3 1,862,195 + -0.1 1,862,195 + -0.6 1,862,197 + -2.5 1,862,198 - +0.2 1,862,198 - +0.7 1,862,198 - +2.7 1,862,208 - +0.3 1,862,253 + +1.6 1,862,253 + +0.5 1,862,338 + -0.4 1,862,339 - +0.0 1,862,339 - +0.8 1,862,356 - -0.2 1,862,382 - -0.1 1,862,382 - +0.6 1,862,382 - +0.4 1,862,510 + -0.2 1,862,511 - -1.2 1,862,511 - +0.7 1,862,511 - +0.8 1,862,511 - +0.5 1,862,732 + +0.7 1,862,732 + +0.4 1,862,734 + +0.4 1,862,735 - +1.2 1,862,735 - +0.2 1,862,735 - +0.7 1,862,896 + -2.1 1,862,944 + -1.0 1,864,924 - +0.4 1,865,022 + SMc00293 0.11 -0.2 1,865,022 + SMc00293 0.11 -0.4 1,865,023 - SMc00293 0.11 +1.9 1,865,023 - SMc00293 0.11 -2.8 1,865,133 + SMc00293 0.20 -0.9 1,865,133 + SMc00293 0.20 -0.2 1,865,167 + SMc00293 0.22 -0.7 1,865,168 - SMc00293 0.22 -0.4 1,865,168 - SMc00293 0.22 +1.3 1,865,168 - SMc00293 0.22 +1.3 1,865,170 - SMc00293 0.23 +0.3 1,865,170 - SMc00293 0.23 -0.3 1,865,411 + SMc00293 0.41 +0.3 1,865,412 - SMc00293 0.41 +1.1 1,865,483 - SMc00293 0.46 -0.9 1,865,517 + SMc00293 0.49 +1.0 1,865,518 - SMc00293 0.49 +0.7 1,865,518 - SMc00293 0.49 +1.1 1,865,698 - SMc00293 0.63 +1.5
Or see this region's nucleotide sequence