Strain Fitness in Sinorhizobium meliloti 1021 around SMc00292

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00291 and SMc00304 are separated by 161 nucleotidesSMc00304 and SMc00305 are separated by 350 nucleotidesSMc00305 and SMc00306 are separated by 181 nucleotidesSMc00306 and SMc00292 are separated by 73 nucleotidesSMc00292 and SMc00293 are separated by 129 nucleotides SMc00291: SMc00291 - lipoprotein, at 1,860,627 to 1,861,946 SMc00291 SMc00304: SMc00304 - tRNA-Glu, at 1,862,108 to 1,862,183 SMc00304 SMc00305: SMc00305 - tRNA-Glu, at 1,862,534 to 1,862,608 SMc00305 SMc00306: SMc00306 - tRNA-Glu, at 1,862,790 to 1,862,865 SMc00306 SMc00292: SMc00292 - single-stranded-DNA-specific exonuclease, at 1,862,939 to 1,864,741 SMc00292 SMc00293: SMc00293 - homoserine dehydrogenase, at 1,864,871 to 1,866,193 SMc00293 Position (kb) 1862 1863 1864 1865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1861.958 kb on + strandat 1861.959 kb on - strandat 1862.045 kb on + strandat 1862.046 kb on - strandat 1862.046 kb on - strandat 1862.048 kb on - strandat 1862.063 kb on - strandat 1862.195 kb on + strandat 1862.195 kb on + strandat 1862.197 kb on + strandat 1862.198 kb on - strandat 1862.198 kb on - strandat 1862.198 kb on - strandat 1862.208 kb on - strandat 1862.253 kb on + strandat 1862.253 kb on + strandat 1862.338 kb on + strandat 1862.339 kb on - strandat 1862.339 kb on - strandat 1862.356 kb on - strandat 1862.382 kb on - strandat 1862.382 kb on - strandat 1862.382 kb on - strandat 1862.510 kb on + strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.732 kb on + strandat 1862.732 kb on + strandat 1862.734 kb on + strandat 1862.735 kb on - strandat 1862.735 kb on - strandat 1862.735 kb on - strandat 1862.896 kb on + strandat 1862.944 kb on + strandat 1864.924 kb on - strandat 1865.022 kb on + strand, within SMc00293at 1865.022 kb on + strand, within SMc00293at 1865.023 kb on - strand, within SMc00293at 1865.023 kb on - strand, within SMc00293at 1865.133 kb on + strand, within SMc00293at 1865.133 kb on + strand, within SMc00293at 1865.167 kb on + strand, within SMc00293at 1865.168 kb on - strand, within SMc00293at 1865.168 kb on - strand, within SMc00293at 1865.168 kb on - strand, within SMc00293at 1865.170 kb on - strand, within SMc00293at 1865.170 kb on - strand, within SMc00293at 1865.411 kb on + strand, within SMc00293at 1865.412 kb on - strand, within SMc00293at 1865.483 kb on - strand, within SMc00293at 1865.517 kb on + strand, within SMc00293at 1865.518 kb on - strand, within SMc00293at 1865.518 kb on - strand, within SMc00293at 1865.698 kb on - strand, within SMc00293

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,861,958 + -0.8
1,861,959 - -1.2
1,862,045 + +0.0
1,862,046 - -0.5
1,862,046 - -2.4
1,862,048 - -0.3
1,862,063 - +2.3
1,862,195 + -0.1
1,862,195 + -0.6
1,862,197 + -2.5
1,862,198 - +0.2
1,862,198 - +0.7
1,862,198 - +2.7
1,862,208 - +0.3
1,862,253 + +1.6
1,862,253 + +0.5
1,862,338 + -0.4
1,862,339 - +0.0
1,862,339 - +0.8
1,862,356 - -0.2
1,862,382 - -0.1
1,862,382 - +0.6
1,862,382 - +0.4
1,862,510 + -0.2
1,862,511 - -1.2
1,862,511 - +0.7
1,862,511 - +0.8
1,862,511 - +0.5
1,862,732 + +0.7
1,862,732 + +0.4
1,862,734 + +0.4
1,862,735 - +1.2
1,862,735 - +0.2
1,862,735 - +0.7
1,862,896 + -2.1
1,862,944 + -1.0
1,864,924 - +0.4
1,865,022 + SMc00293 0.11 -0.2
1,865,022 + SMc00293 0.11 -0.4
1,865,023 - SMc00293 0.11 +1.9
1,865,023 - SMc00293 0.11 -2.8
1,865,133 + SMc00293 0.20 -0.9
1,865,133 + SMc00293 0.20 -0.2
1,865,167 + SMc00293 0.22 -0.7
1,865,168 - SMc00293 0.22 -0.4
1,865,168 - SMc00293 0.22 +1.3
1,865,168 - SMc00293 0.22 +1.3
1,865,170 - SMc00293 0.23 +0.3
1,865,170 - SMc00293 0.23 -0.3
1,865,411 + SMc00293 0.41 +0.3
1,865,412 - SMc00293 0.41 +1.1
1,865,483 - SMc00293 0.46 -0.9
1,865,517 + SMc00293 0.49 +1.0
1,865,518 - SMc00293 0.49 +0.7
1,865,518 - SMc00293 0.49 +1.1
1,865,698 - SMc00293 0.63 +1.5

Or see this region's nucleotide sequence