Strain Fitness in Sinorhizobium meliloti 1021 around SMc00196

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00183 and SMc00182 are separated by 78 nucleotidesSMc00182 and SMc00196 overlap by 4 nucleotidesSMc00196 and SMc00181 are separated by 200 nucleotidesSMc00181 and SMc00180 are separated by 202 nucleotides SMc00183: SMc00183 - hypothetical protein, at 1,980,720 to 1,981,292 SMc00183 SMc00182: SMc00182 - transcriptional regulator, at 1,981,371 to 1,981,856 SMc00182 SMc00196: SMc00196 - transporter, at 1,981,853 to 1,982,980 SMc00196 SMc00181: SMc00181 - hypothetical protein, at 1,983,181 to 1,983,441 SMc00181 SMc00180: SMc00180 - coproporphyrinogen III oxidase, at 1,983,644 to 1,984,555 SMc00180 Position (kb) 1981 1982 1983Strain fitness (log2 ratio) -3 -2 -1 0 1at 1980.948 kb on + strand, within SMc00183at 1980.948 kb on + strand, within SMc00183at 1980.949 kb on - strand, within SMc00183at 1980.970 kb on + strand, within SMc00183at 1980.970 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.057 kb on + strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.261 kb on + strandat 1981.394 kb on + strandat 1981.395 kb on - strandat 1981.395 kb on - strandat 1981.568 kb on + strand, within SMc00182at 1981.854 kb on + strandat 1981.854 kb on + strandat 1981.855 kb on - strandat 1981.855 kb on - strandat 1981.876 kb on + strandat 1981.876 kb on + strandat 1982.112 kb on + strand, within SMc00196at 1982.112 kb on + strand, within SMc00196at 1982.112 kb on + strand, within SMc00196at 1982.113 kb on - strand, within SMc00196at 1982.362 kb on + strand, within SMc00196at 1982.363 kb on - strand, within SMc00196at 1982.751 kb on + strand, within SMc00196at 1982.848 kb on - strand, within SMc00196at 1982.910 kb on + strandat 1982.910 kb on + strandat 1983.121 kb on + strandat 1983.122 kb on - strandat 1983.122 kb on - strandat 1983.122 kb on - strandat 1983.264 kb on - strand, within SMc00181at 1983.430 kb on + strandat 1983.448 kb on + strandat 1983.448 kb on + strandat 1983.448 kb on + strandat 1983.466 kb on - strandat 1983.483 kb on - strandat 1983.483 kb on - strandat 1983.483 kb on - strandat 1983.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,980,948 + SMc00183 0.40 +0.2
1,980,948 + SMc00183 0.40 -0.4
1,980,949 - SMc00183 0.40 +0.2
1,980,970 + SMc00183 0.44 -2.5
1,980,970 + SMc00183 0.44 +0.4
1,981,009 + SMc00183 0.50 +0.3
1,981,009 + SMc00183 0.50 -0.2
1,981,009 + SMc00183 0.50 +0.8
1,981,057 + SMc00183 0.59 -0.2
1,981,058 - SMc00183 0.59 -1.2
1,981,058 - SMc00183 0.59 -0.5
1,981,058 - SMc00183 0.59 +0.2
1,981,261 + +0.2
1,981,394 + +1.7
1,981,395 - -0.2
1,981,395 - -0.0
1,981,568 + SMc00182 0.41 +0.2
1,981,854 + +1.1
1,981,854 + +0.7
1,981,855 - +0.2
1,981,855 - +1.0
1,981,876 + -0.7
1,981,876 + +0.2
1,982,112 + SMc00196 0.23 +0.2
1,982,112 + SMc00196 0.23 +0.3
1,982,112 + SMc00196 0.23 -2.6
1,982,113 - SMc00196 0.23 +0.9
1,982,362 + SMc00196 0.45 -3.7
1,982,363 - SMc00196 0.45 -1.7
1,982,751 + SMc00196 0.80 -1.6
1,982,848 - SMc00196 0.88 -3.2
1,982,910 + -0.8
1,982,910 + +0.3
1,983,121 + -1.3
1,983,122 - +0.4
1,983,122 - +0.2
1,983,122 - +1.2
1,983,264 - SMc00181 0.32 -2.3
1,983,430 + -1.5
1,983,448 + +0.9
1,983,448 + +0.9
1,983,448 + -0.8
1,983,466 - -3.1
1,983,483 - -0.8
1,983,483 - -0.4
1,983,483 - -0.5
1,983,574 + -0.0

Or see this region's nucleotide sequence