Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00008 and SMc00071 are separated by 68 nucleotides SMc00071 and SMc00009 are separated by 401 nucleotides
SMc00008: SMc00008 - riboflavin biosynthesis protein RibA, at 989,937 to 991,037
SMc00008
SMc00071: SMc00071 - hypothetical protein, at 991,106 to 991,636
SMc00071
SMc00009: SMc00009 - cytochrome C oxidase subunit II protein, at 992,038 to 992,922
SMc00009
Position (kb) 991
992 Strain fitness (log2 ratio) -2
-1
0
1 at 990.260 kb on + strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.371 kb on + strand, within SMc00008 at 990.618 kb on + strand, within SMc00008 at 990.619 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008 at 990.984 kb on + strand at 990.984 kb on + strand at 990.985 kb on - strand at 990.985 kb on - strand at 990.985 kb on - strand at 990.985 kb on - strand at 991.057 kb on - strand at 991.669 kb on - strand at 991.690 kb on - strand at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.298 kb on + strand, within SMc00009 at 992.455 kb on + strand, within SMc00009
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 990,260 + SMc00008 0.29 -0.7 990,261 - SMc00008 0.29 -0.0 990,261 - SMc00008 0.29 -0.9 990,322 + SMc00008 0.35 +0.6 990,322 + SMc00008 0.35 -0.8 990,323 - SMc00008 0.35 -0.3 990,323 - SMc00008 0.35 +0.5 990,323 - SMc00008 0.35 -0.2 990,371 + SMc00008 0.39 -0.1 990,618 + SMc00008 0.62 -1.3 990,619 - SMc00008 0.62 +0.1 990,799 - SMc00008 0.78 -1.0 990,799 - SMc00008 0.78 -1.3 990,984 + -0.2 990,984 + -0.7 990,985 - +0.9 990,985 - +1.7 990,985 - -1.0 990,985 - -1.1 991,057 - +0.1 991,669 - +0.1 991,690 - -2.3 992,185 + SMc00009 0.17 +1.7 992,185 + SMc00009 0.17 +0.5 992,185 + SMc00009 0.17 +0.8 992,186 - SMc00009 0.17 -2.0 992,186 - SMc00009 0.17 +1.7 992,298 + SMc00009 0.29 +1.3 992,455 + SMc00009 0.47 +0.2
Or see this region's nucleotide sequence