Strain Fitness in Sinorhizobium meliloti 1021 around SMa2329

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2327 and SMa2329 are separated by 18 nucleotidesSMa2329 and SMa2331 are separated by 2 nucleotides SMa2327: SMa2327 - sensor protein, at 1,297,079 to 1,299,769 SMa2327 SMa2329: SMa2329 - potassium-transporting ATPase subunit C, at 1,299,788 to 1,300,357 SMa2329 SMa2331: SMa2331 - potassium-transporting ATPase subunit B, at 1,300,360 to 1,302,402 SMa2331 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1299.048 kb on + strand, within SMa2327at 1299.048 kb on + strand, within SMa2327at 1299.049 kb on - strand, within SMa2327at 1299.289 kb on + strand, within SMa2327at 1299.351 kb on - strand, within SMa2327at 1299.351 kb on - strand, within SMa2327at 1299.351 kb on - strand, within SMa2327at 1299.374 kb on + strand, within SMa2327at 1299.374 kb on + strand, within SMa2327at 1299.375 kb on - strand, within SMa2327at 1299.375 kb on - strand, within SMa2327at 1299.375 kb on - strand, within SMa2327at 1299.375 kb on - strand, within SMa2327at 1299.375 kb on - strand, within SMa2327at 1299.377 kb on - strand, within SMa2327at 1299.377 kb on - strand, within SMa2327at 1299.418 kb on + strand, within SMa2327at 1299.425 kb on + strand, within SMa2327at 1299.425 kb on + strand, within SMa2327at 1299.824 kb on + strandat 1299.824 kb on + strandat 1299.825 kb on - strandat 1299.825 kb on - strandat 1299.825 kb on - strandat 1299.849 kb on - strand, within SMa2329at 1299.849 kb on - strand, within SMa2329at 1299.897 kb on - strand, within SMa2329at 1299.967 kb on + strand, within SMa2329at 1300.026 kb on - strand, within SMa2329at 1300.026 kb on - strand, within SMa2329at 1300.125 kb on + strand, within SMa2329at 1300.125 kb on + strand, within SMa2329at 1300.126 kb on - strand, within SMa2329at 1300.126 kb on - strand, within SMa2329at 1300.165 kb on - strandat 1300.165 kb on - strand, within SMa2329at 1300.314 kb on - strandat 1300.439 kb on + strandat 1300.487 kb on + strandat 1300.587 kb on + strand, within SMa2331at 1300.587 kb on + strand, within SMa2331at 1300.593 kb on + strand, within SMa2331at 1300.594 kb on - strand, within SMa2331at 1300.594 kb on - strand, within SMa2331at 1300.866 kb on + strand, within SMa2331at 1300.866 kb on + strand, within SMa2331at 1300.866 kb on + strand, within SMa2331at 1300.867 kb on - strand, within SMa2331at 1300.867 kb on - strand, within SMa2331at 1300.867 kb on - strand, within SMa2331at 1300.905 kb on - strand, within SMa2331at 1301.006 kb on - strand, within SMa2331

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,299,048 + SMa2327 0.73 -0.5
1,299,048 + SMa2327 0.73 -1.3
1,299,049 - SMa2327 0.73 -0.2
1,299,289 + SMa2327 0.82 -1.9
1,299,351 - SMa2327 0.84 +0.0
1,299,351 - SMa2327 0.84 -1.2
1,299,351 - SMa2327 0.84 -0.6
1,299,374 + SMa2327 0.85 +0.9
1,299,374 + SMa2327 0.85 -2.6
1,299,375 - SMa2327 0.85 -0.1
1,299,375 - SMa2327 0.85 -2.1
1,299,375 - SMa2327 0.85 +0.2
1,299,375 - SMa2327 0.85 -0.3
1,299,375 - SMa2327 0.85 -2.0
1,299,377 - SMa2327 0.85 +0.5
1,299,377 - SMa2327 0.85 -1.9
1,299,418 + SMa2327 0.87 -1.6
1,299,425 + SMa2327 0.87 +0.3
1,299,425 + SMa2327 0.87 -1.2
1,299,824 + -1.6
1,299,824 + -0.1
1,299,825 - +2.8
1,299,825 - +0.1
1,299,825 - +0.3
1,299,849 - SMa2329 0.11 -1.2
1,299,849 - SMa2329 0.11 +0.2
1,299,897 - SMa2329 0.19 +4.2
1,299,967 + SMa2329 0.31 +1.9
1,300,026 - SMa2329 0.42 -0.8
1,300,026 - SMa2329 0.42 -3.1
1,300,125 + SMa2329 0.59 +1.6
1,300,125 + SMa2329 0.59 +0.9
1,300,126 - SMa2329 0.59 +0.1
1,300,126 - SMa2329 0.59 +0.5
1,300,165 - +2.2
1,300,165 - SMa2329 0.66 -0.4
1,300,314 - +1.0
1,300,439 + -0.8
1,300,487 + +0.1
1,300,587 + SMa2331 0.11 -3.4
1,300,587 + SMa2331 0.11 -3.8
1,300,593 + SMa2331 0.11 +0.8
1,300,594 - SMa2331 0.11 -0.8
1,300,594 - SMa2331 0.11 +1.1
1,300,866 + SMa2331 0.25 -1.2
1,300,866 + SMa2331 0.25 +2.2
1,300,866 + SMa2331 0.25 -0.1
1,300,867 - SMa2331 0.25 -0.3
1,300,867 - SMa2331 0.25 +0.1
1,300,867 - SMa2331 0.25 +0.2
1,300,905 - SMa2331 0.27 -1.9
1,301,006 - SMa2331 0.32 -0.5

Or see this region's nucleotide sequence