Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2081 and SMa2083 are separated by 2 nucleotides SMa2083 and SMa2085 overlap by 1 nucleotides
SMa2079: SMa2079 - ABC transporter ATP-binding protein, at 1,174,158 to 1,175,102
SMa2079
SMa2081: SMa2081 - ABC transporter ATP-binding protein, at 1,175,080 to 1,176,078
SMa2081
SMa2083: SMa2083 - ABC transporter permease, at 1,176,081 to 1,177,079
SMa2083
SMa2085: SMa2085 - ABC transporter permease, at 1,177,079 to 1,178,065
SMa2085
Position (kb)
1176
1177
1178 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1175.340 kb on + strand, within SMa2081 at 1175.342 kb on + strand, within SMa2081 at 1175.342 kb on + strand, within SMa2081 at 1175.343 kb on - strand, within SMa2081 at 1175.406 kb on - strand, within SMa2081 at 1175.406 kb on - strand, within SMa2081 at 1175.421 kb on + strand, within SMa2081 at 1175.639 kb on + strand, within SMa2081 at 1176.095 kb on + strand at 1176.190 kb on + strand, within SMa2083 at 1176.190 kb on + strand, within SMa2083 at 1176.815 kb on - strand, within SMa2083 at 1176.971 kb on + strand, within SMa2083 at 1176.971 kb on + strand, within SMa2083 at 1176.972 kb on - strand, within SMa2083 at 1176.972 kb on - strand, within SMa2083 at 1177.227 kb on - strand, within SMa2085 at 1177.240 kb on + strand, within SMa2085 at 1177.240 kb on + strand, within SMa2085 at 1177.241 kb on - strand, within SMa2085 at 1177.241 kb on - strand, within SMa2085 at 1177.449 kb on + strand, within SMa2085 at 1177.485 kb on + strand, within SMa2085 at 1177.485 kb on + strand, within SMa2085 at 1177.485 kb on + strand, within SMa2085 at 1177.486 kb on - strand, within SMa2085 at 1177.624 kb on - strand, within SMa2085
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,175,340 + SMa2081 0.26 -0.4 1,175,342 + SMa2081 0.26 +0.7 1,175,342 + SMa2081 0.26 +1.6 1,175,343 - SMa2081 0.26 +0.3 1,175,406 - SMa2081 0.33 +0.1 1,175,406 - SMa2081 0.33 +0.5 1,175,421 + SMa2081 0.34 -2.7 1,175,639 + SMa2081 0.56 +0.7 1,176,095 + +0.3 1,176,190 + SMa2083 0.11 -0.2 1,176,190 + SMa2083 0.11 -2.8 1,176,815 - SMa2083 0.73 -0.1 1,176,971 + SMa2083 0.89 -0.5 1,176,971 + SMa2083 0.89 -0.5 1,176,972 - SMa2083 0.89 -1.2 1,176,972 - SMa2083 0.89 +0.0 1,177,227 - SMa2085 0.15 -0.8 1,177,240 + SMa2085 0.16 -0.4 1,177,240 + SMa2085 0.16 +0.7 1,177,241 - SMa2085 0.16 +3.0 1,177,241 - SMa2085 0.16 -0.6 1,177,449 + SMa2085 0.37 -0.8 1,177,485 + SMa2085 0.41 -0.6 1,177,485 + SMa2085 0.41 +2.1 1,177,485 + SMa2085 0.41 +0.2 1,177,486 - SMa2085 0.41 +0.5 1,177,624 - SMa2085 0.55 -2.3
Or see this region's nucleotide sequence