Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1884 and SMa1885 overlap by 4 nucleotides SMa1885 and SMa1887 are separated by 65 nucleotides SMa1887 and SMa1890 are separated by 96 nucleotides
SMa1884: SMa1884 - Cation/multidrug efflux protein, at 1,069,938 to 1,073,048
SMa1884
SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193
SMa1885
SMa1887: SMa1887 - transcriptional regulator, at 1,074,259 to 1,074,861
SMa1887
SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602
SMa1890
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1072.100 kb on + strand, within SMa1884 at 1072.339 kb on + strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.596 kb on - strand, within SMa1884 at 1072.639 kb on + strand, within SMa1884 at 1072.640 kb on - strand, within SMa1884 at 1072.717 kb on + strand, within SMa1884 at 1072.813 kb on + strand at 1072.894 kb on - strand at 1072.894 kb on - strand at 1072.899 kb on - strand at 1073.364 kb on + strand, within SMa1885 at 1073.365 kb on - strand, within SMa1885 at 1073.376 kb on + strand, within SMa1885 at 1073.376 kb on + strand at 1073.377 kb on - strand, within SMa1885 at 1073.377 kb on - strand, within SMa1885 at 1073.452 kb on - strand, within SMa1885 at 1073.631 kb on + strand, within SMa1885 at 1073.678 kb on + strand, within SMa1885 at 1073.678 kb on + strand, within SMa1885 at 1073.679 kb on - strand, within SMa1885 at 1073.722 kb on - strand, within SMa1885 at 1073.722 kb on - strand, within SMa1885 at 1073.766 kb on + strand, within SMa1885 at 1073.766 kb on + strand, within SMa1885 at 1073.767 kb on - strand, within SMa1885 at 1073.824 kb on + strand, within SMa1885 at 1073.977 kb on + strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1075.177 kb on + strand, within SMa1890 at 1075.177 kb on + strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,072,100 + SMa1884 0.69 +0.2 1,072,339 + SMa1884 0.77 -1.3 1,072,340 - SMa1884 0.77 -0.2 1,072,340 - SMa1884 0.77 +0.6 1,072,340 - SMa1884 0.77 -0.8 1,072,340 - SMa1884 0.77 +1.6 1,072,340 - SMa1884 0.77 -0.0 1,072,596 - SMa1884 0.85 -0.8 1,072,639 + SMa1884 0.87 -1.0 1,072,640 - SMa1884 0.87 +0.5 1,072,717 + SMa1884 0.89 -2.7 1,072,813 + -1.1 1,072,894 - +2.5 1,072,894 - +3.9 1,072,899 - -3.6 1,073,364 + SMa1885 0.28 -1.0 1,073,365 - SMa1885 0.28 -0.1 1,073,376 + SMa1885 0.29 +1.2 1,073,376 + -0.8 1,073,377 - SMa1885 0.29 +0.1 1,073,377 - SMa1885 0.29 -0.2 1,073,452 - SMa1885 0.35 +1.6 1,073,631 + SMa1885 0.51 +0.6 1,073,678 + SMa1885 0.55 -2.2 1,073,678 + SMa1885 0.55 -0.1 1,073,679 - SMa1885 0.55 +0.4 1,073,722 - SMa1885 0.59 +0.4 1,073,722 - SMa1885 0.59 -0.4 1,073,766 + SMa1885 0.63 +1.2 1,073,766 + SMa1885 0.63 +2.0 1,073,767 - SMa1885 0.63 +1.0 1,073,824 + SMa1885 0.68 -1.0 1,073,977 + SMa1885 0.81 +0.4 1,073,978 - SMa1885 0.81 -0.7 1,073,978 - SMa1885 0.81 -0.5 1,074,030 - SMa1885 0.86 +0.2 1,074,030 - SMa1885 0.86 +0.7 1,075,177 + SMa1890 0.34 -0.3 1,075,177 + SMa1890 0.34 +1.6 1,075,178 - SMa1890 0.34 +3.6 1,075,178 - SMa1890 0.34 -0.9 1,075,178 - SMa1890 0.34 -0.4 1,075,178 - SMa1890 0.34 +0.5 1,075,178 - SMa1890 0.34 +0.1 1,075,178 - SMa1890 0.34 -0.3 1,075,178 - SMa1890 0.34 -2.2 1,075,178 - SMa1890 0.34 -0.4
Or see this region's nucleotide sequence