Strain Fitness in Sinorhizobium meliloti 1021 around SMa1541

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1538 and SMa1539 overlap by 35 nucleotidesSMa1539 and SMa1541 overlap by 37 nucleotidesSMa1541 and SMa1544 are separated by 4 nucleotidesSMa1544 and SMa1545 overlap by 1 nucleotides SMa1538: SMa1538 - monovalent cation/H+ antiporter subunit D, at 848,840 to 850,600 SMa1538 SMa1539: SMa1539 - hypothetical protein, at 850,566 to 850,880 SMa1539 SMa1541: SMa1541 - monovalent cation/H+ antiporter subunit D, at 850,844 to 852,307 SMa1541 SMa1544: SMa1544 - NuoK2 NADH:quinone oxidoreductase subunit 11 (chain K), at 852,312 to 852,614 SMa1544 SMa1545: SMa1545 - NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J), at 852,614 to 853,114 SMa1545 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 849.847 kb on - strand, within SMa1538at 849.847 kb on - strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.975 kb on + strand, within SMa1538at 850.044 kb on + strand, within SMa1538at 850.162 kb on - strand, within SMa1538at 850.212 kb on + strand, within SMa1538at 850.260 kb on + strand, within SMa1538at 850.261 kb on - strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.470 kb on - strandat 850.539 kb on - strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.603 kb on + strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.720 kb on + strand, within SMa1539at 850.721 kb on - strand, within SMa1539at 850.781 kb on - strand, within SMa1539at 850.807 kb on + strand, within SMa1539at 850.878 kb on + strandat 850.878 kb on + strandat 850.879 kb on - strandat 850.879 kb on - strandat 851.002 kb on - strand, within SMa1541at 851.002 kb on - strand, within SMa1541at 851.020 kb on - strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.327 kb on + strand, within SMa1541at 851.333 kb on + strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.452 kb on - strand, within SMa1541at 851.746 kb on - strand, within SMa1541at 851.746 kb on - strand, within SMa1541at 851.805 kb on + strand, within SMa1541at 851.806 kb on - strand, within SMa1541at 851.847 kb on + strand, within SMa1541at 851.847 kb on + strand, within SMa1541at 851.848 kb on - strand, within SMa1541at 851.860 kb on - strand, within SMa1541at 851.883 kb on + strand, within SMa1541at 851.883 kb on + strand, within SMa1541at 851.883 kb on + strand, within SMa1541at 851.890 kb on + strand, within SMa1541at 851.891 kb on - strand, within SMa1541at 851.999 kb on - strand, within SMa1541at 851.999 kb on - strand, within SMa1541at 852.000 kb on + strand, within SMa1541at 852.013 kb on - strand, within SMa1541at 852.056 kb on + strand, within SMa1541at 852.056 kb on + strand, within SMa1541at 852.314 kb on - strandat 852.457 kb on + strand, within SMa1544at 852.458 kb on - strand, within SMa1544at 852.460 kb on + strand, within SMa1544at 852.461 kb on - strand, within SMa1544at 852.461 kb on - strand, within SMa1544at 852.936 kb on + strand, within SMa1545at 852.936 kb on + strand, within SMa1545at 852.936 kb on + strand, within SMa1545at 852.937 kb on - strand, within SMa1545at 852.937 kb on - strand, within SMa1545at 852.980 kb on - strand, within SMa1545at 853.168 kb on + strandat 853.194 kb on + strandat 853.194 kb on + strandat 853.194 kb on + strandat 853.217 kb on + strandat 853.217 kb on + strandat 853.277 kb on + strandat 853.278 kb on - strandat 853.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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849,847 - SMa1538 0.57 +0.9
849,847 - SMa1538 0.57 +0.2
849,912 + SMa1538 0.61 +2.2
849,912 + SMa1538 0.61 -0.2
849,912 + SMa1538 0.61 -0.6
849,975 + SMa1538 0.64 +1.2
850,044 + SMa1538 0.68 +1.3
850,162 - SMa1538 0.75 +0.2
850,212 + SMa1538 0.78 -2.0
850,260 + SMa1538 0.81 +0.8
850,261 - SMa1538 0.81 +1.2
850,299 + SMa1538 0.83 -2.0
850,299 + SMa1538 0.83 -3.1
850,347 + SMa1538 0.86 +0.6
850,347 + SMa1538 0.86 -1.0
850,348 - SMa1538 0.86 +0.0
850,348 - SMa1538 0.86 -0.1
850,470 - +0.3
850,539 - +0.2
850,600 + -0.8
850,600 + -0.6
850,600 + +1.1
850,600 + -1.5
850,601 - SMa1539 0.11 -1.0
850,601 - SMa1539 0.11 +2.2
850,601 - SMa1539 0.11 +0.3
850,601 - SMa1539 0.11 -0.8
850,601 - SMa1539 0.11 -0.6
850,601 - SMa1539 0.11 -0.3
850,601 - SMa1539 0.11 -0.9
850,601 - SMa1539 0.11 +2.4
850,601 - SMa1539 0.11 +0.7
850,601 - SMa1539 0.11 -0.5
850,603 + SMa1539 0.12 -2.2
850,604 - SMa1539 0.12 -0.4
850,604 - SMa1539 0.12 -0.4
850,720 + SMa1539 0.49 +1.2
850,721 - SMa1539 0.49 +0.1
850,781 - SMa1539 0.68 -0.5
850,807 + SMa1539 0.77 -0.1
850,878 + +1.2
850,878 + -2.6
850,879 - -1.6
850,879 - -2.1
851,002 - SMa1541 0.11 -2.0
851,002 - SMa1541 0.11 -0.0
851,020 - SMa1541 0.12 -0.1
851,238 + SMa1541 0.27 -2.4
851,238 + SMa1541 0.27 +0.4
851,238 + SMa1541 0.27 -3.2
851,238 + SMa1541 0.27 -0.2
851,239 - SMa1541 0.27 -0.3
851,239 - SMa1541 0.27 +0.4
851,327 + SMa1541 0.33 -0.4
851,333 + SMa1541 0.33 -0.4
851,334 - SMa1541 0.33 +0.7
851,334 - SMa1541 0.33 -0.1
851,352 + SMa1541 0.35 +1.2
851,352 + SMa1541 0.35 -2.4
851,353 - SMa1541 0.35 -0.5
851,353 - SMa1541 0.35 -0.2
851,376 + SMa1541 0.36 -3.2
851,376 + SMa1541 0.36 -0.2
851,451 + SMa1541 0.41 -0.8
851,451 + SMa1541 0.41 +0.8
851,451 + SMa1541 0.41 +1.8
851,451 + SMa1541 0.41 -0.6
851,452 - SMa1541 0.42 +1.7
851,746 - SMa1541 0.62 -0.4
851,746 - SMa1541 0.62 -1.3
851,805 + SMa1541 0.66 -0.6
851,806 - SMa1541 0.66 +0.6
851,847 + SMa1541 0.69 +0.2
851,847 + SMa1541 0.69 -1.2
851,848 - SMa1541 0.69 -0.8
851,860 - SMa1541 0.69 -0.4
851,883 + SMa1541 0.71 -0.2
851,883 + SMa1541 0.71 -2.4
851,883 + SMa1541 0.71 -2.1
851,890 + SMa1541 0.71 +1.2
851,891 - SMa1541 0.72 -1.6
851,999 - SMa1541 0.79 +0.5
851,999 - SMa1541 0.79 -0.9
852,000 + SMa1541 0.79 -3.0
852,013 - SMa1541 0.80 -0.2
852,056 + SMa1541 0.83 -0.1
852,056 + SMa1541 0.83 +4.2
852,314 - +0.2
852,457 + SMa1544 0.48 +0.2
852,458 - SMa1544 0.48 -0.8
852,460 + SMa1544 0.49 +0.5
852,461 - SMa1544 0.49 +0.7
852,461 - SMa1544 0.49 +0.7
852,936 + SMa1545 0.64 -0.1
852,936 + SMa1545 0.64 +0.4
852,936 + SMa1545 0.64 +1.2
852,937 - SMa1545 0.64 -0.2
852,937 - SMa1545 0.64 -1.1
852,980 - SMa1545 0.73 +1.0
853,168 + -0.1
853,194 + -1.9
853,194 + -0.4
853,194 + -1.2
853,217 + -0.1
853,217 + -0.2
853,277 + +0.2
853,278 - -0.3
853,278 - -0.1

Or see this region's nucleotide sequence