Strain Fitness in Sinorhizobium meliloti 1021 around SMa1536

Experiment: Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1535 and SMa1536 overlap by 4 nucleotidesSMa1536 and SMa1538 are separated by 6 nucleotides SMa1535: SMa1535 - NuoN2 NADH I chain N, at 845,922 to 847,361 SMa1535 SMa1536: SMa1536 - NuoM2 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase, at 847,358 to 848,833 SMa1536 SMa1538: SMa1538 - monovalent cation/H+ antiporter subunit D, at 848,840 to 850,600 SMa1538 Position (kb) 847 848 849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 846.364 kb on + strand, within SMa1535at 846.364 kb on + strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.376 kb on + strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.662 kb on - strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.681 kb on - strand, within SMa1535at 846.804 kb on - strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.875 kb on - strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 847.033 kb on + strand, within SMa1535at 847.033 kb on + strandat 847.033 kb on + strand, within SMa1535at 847.034 kb on - strand, within SMa1535at 847.036 kb on + strand, within SMa1535at 847.037 kb on - strand, within SMa1535at 847.060 kb on - strand, within SMa1535at 847.108 kb on + strand, within SMa1535at 847.108 kb on + strand, within SMa1535at 847.225 kb on - strandat 847.511 kb on + strand, within SMa1536at 847.511 kb on + strand, within SMa1536at 847.511 kb on + strand, within SMa1536at 847.512 kb on - strand, within SMa1536at 847.518 kb on + strand, within SMa1536at 847.560 kb on + strand, within SMa1536at 847.560 kb on + strand, within SMa1536at 847.575 kb on + strand, within SMa1536at 847.576 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.791 kb on + strand, within SMa1536at 847.930 kb on - strand, within SMa1536at 847.930 kb on - strand, within SMa1536at 848.022 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.359 kb on - strand, within SMa1536at 848.359 kb on - strand, within SMa1536at 848.397 kb on + strand, within SMa1536at 848.398 kb on - strand, within SMa1536at 848.398 kb on - strand, within SMa1536at 848.430 kb on + strand, within SMa1536at 848.430 kb on + strand, within SMa1536at 848.431 kb on - strand, within SMa1536at 848.431 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.841 kb on + strandat 848.905 kb on - strandat 848.939 kb on + strandat 849.084 kb on + strand, within SMa1538at 849.084 kb on + strand, within SMa1538at 849.138 kb on + strand, within SMa1538at 849.258 kb on + strand, within SMa1538at 849.259 kb on - strand, within SMa1538at 849.414 kb on + strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.418 kb on - strand, within SMa1538at 849.580 kb on + strand, within SMa1538at 849.580 kb on + strand, within SMa1538at 849.581 kb on - strand, within SMa1538at 849.582 kb on + strandat 849.583 kb on - strand, within SMa1538at 849.583 kb on - strand, within SMa1538at 849.654 kb on + strand, within SMa1538at 849.693 kb on + strand, within SMa1538at 849.694 kb on - strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.795 kb on + strand, within SMa1538at 849.796 kb on - strand, within SMa1538at 849.796 kb on - strand, within SMa1538

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
remove
846,364 + SMa1535 0.31 +0.7
846,364 + SMa1535 0.31 +0.5
846,365 - SMa1535 0.31 +1.4
846,365 - SMa1535 0.31 -0.1
846,376 + SMa1535 0.32 -3.7
846,377 - SMa1535 0.32 -1.1
846,377 - SMa1535 0.32 -0.8
846,377 - SMa1535 0.32 -0.1
846,384 + SMa1535 0.32 +0.4
846,384 + SMa1535 0.32 -1.1
846,661 + SMa1535 0.51 -0.8
846,661 + SMa1535 0.51 +0.1
846,661 + SMa1535 0.51 -0.3
846,661 + SMa1535 0.51 -1.4
846,662 - SMa1535 0.51 +0.1
846,680 + SMa1535 0.53 -0.8
846,680 + SMa1535 0.53 +1.2
846,680 + SMa1535 0.53 +0.1
846,680 + SMa1535 0.53 -1.4
846,680 + SMa1535 0.53 +0.5
846,681 - SMa1535 0.53 -0.4
846,804 - SMa1535 0.61 +1.6
846,874 + SMa1535 0.66 +1.6
846,874 + SMa1535 0.66 +2.2
846,874 + SMa1535 0.66 -1.0
846,875 - SMa1535 0.66 +1.2
846,931 + SMa1535 0.70 -2.4
846,931 + SMa1535 0.70 +0.1
846,931 + SMa1535 0.70 -1.3
846,932 - SMa1535 0.70 +0.3
846,932 - SMa1535 0.70 +0.1
846,932 - SMa1535 0.70 -0.7
846,965 - SMa1535 0.72 -0.0
846,965 - SMa1535 0.72 +0.4
846,965 - SMa1535 0.72 -0.1
847,033 + SMa1535 0.77 +0.7
847,033 + -0.4
847,033 + SMa1535 0.77 +2.3
847,034 - SMa1535 0.77 +2.7
847,036 + SMa1535 0.77 +1.0
847,037 - SMa1535 0.77 -0.1
847,060 - SMa1535 0.79 +0.5
847,108 + SMa1535 0.82 -0.4
847,108 + SMa1535 0.82 -2.0
847,225 - +0.6
847,511 + SMa1536 0.10 -1.8
847,511 + SMa1536 0.10 +0.8
847,511 + SMa1536 0.10 -0.4
847,512 - SMa1536 0.10 +0.2
847,518 + SMa1536 0.11 +0.7
847,560 + SMa1536 0.14 -0.8
847,560 + SMa1536 0.14 -1.8
847,575 + SMa1536 0.15 -3.0
847,576 - SMa1536 0.15 -2.9
847,729 - SMa1536 0.25 +0.1
847,729 - SMa1536 0.25 -0.3
847,729 - SMa1536 0.25 -3.7
847,791 + SMa1536 0.29 -1.4
847,930 - SMa1536 0.39 -1.1
847,930 - SMa1536 0.39 +1.2
848,022 + SMa1536 0.45 -1.3
848,025 + SMa1536 0.45 -0.5
848,025 + SMa1536 0.45 -0.2
848,358 + SMa1536 0.68 +0.3
848,358 + SMa1536 0.68 -0.2
848,358 + SMa1536 0.68 -0.2
848,359 - SMa1536 0.68 -0.4
848,359 - SMa1536 0.68 +0.1
848,397 + SMa1536 0.70 +1.1
848,398 - SMa1536 0.70 +0.1
848,398 - SMa1536 0.70 +0.8
848,430 + SMa1536 0.73 -1.4
848,430 + SMa1536 0.73 -0.9
848,431 - SMa1536 0.73 +0.8
848,431 - SMa1536 0.73 +1.8
848,614 - SMa1536 0.85 -3.3
848,614 - SMa1536 0.85 -0.3
848,614 - SMa1536 0.85 -0.2
848,614 - SMa1536 0.85 -0.7
848,614 - SMa1536 0.85 -0.7
848,841 + +0.1
848,905 - -0.4
848,939 + +0.3
849,084 + SMa1538 0.14 +1.0
849,084 + SMa1538 0.14 +1.4
849,138 + SMa1538 0.17 +2.7
849,258 + SMa1538 0.24 -0.2
849,259 - SMa1538 0.24 +0.2
849,414 + SMa1538 0.33 -0.0
849,415 - SMa1538 0.33 +0.3
849,415 - SMa1538 0.33 -1.5
849,415 - SMa1538 0.33 +0.2
849,415 - SMa1538 0.33 -0.5
849,415 - SMa1538 0.33 -2.1
849,418 - SMa1538 0.33 +0.2
849,580 + SMa1538 0.42 -1.0
849,580 + SMa1538 0.42 -2.0
849,581 - SMa1538 0.42 +3.2
849,582 + +1.2
849,583 - SMa1538 0.42 +0.6
849,583 - SMa1538 0.42 -1.7
849,654 + SMa1538 0.46 -3.1
849,693 + SMa1538 0.48 -0.2
849,694 - SMa1538 0.48 -2.7
849,771 + SMa1538 0.53 +0.3
849,771 + SMa1538 0.53 +0.0
849,771 + SMa1538 0.53 -1.4
849,772 - SMa1538 0.53 -0.2
849,772 - SMa1538 0.53 +1.1
849,790 + SMa1538 0.54 -0.6
849,790 + SMa1538 0.54 -0.0
849,790 + SMa1538 0.54 +0.8
849,790 + SMa1538 0.54 +0.8
849,790 + SMa1538 0.54 +0.6
849,791 - SMa1538 0.54 +0.0
849,791 - SMa1538 0.54 +0.4
849,791 - SMa1538 0.54 -0.6
849,795 + SMa1538 0.54 +0.2
849,796 - SMa1538 0.54 -0.2
849,796 - SMa1538 0.54 +1.2

Or see this region's nucleotide sequence