Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1337 and SMa1339 are separated by 142 nucleotides SMa1339 and SMa1341 are separated by 1 nucleotides
SMa1337: SMa1337 - ABC transporter substrate-binding protein, at 731,337 to 732,644
SMa1337
SMa1339: SMa1339 - ABC transporter permease, at 732,787 to 733,692
SMa1339
SMa1341: SMa1341 - ABC transporter permease, at 733,694 to 734,653
SMa1341
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 731.829 kb on + strand, within SMa1337 at 731.829 kb on + strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.928 kb on + strand, within SMa1337 at 732.006 kb on + strand, within SMa1337 at 732.007 kb on - strand, within SMa1337 at 732.016 kb on - strand, within SMa1337 at 732.016 kb on - strand, within SMa1337 at 732.089 kb on + strand, within SMa1337 at 732.171 kb on + strand at 732.171 kb on + strand, within SMa1337 at 732.172 kb on - strand, within SMa1337 at 732.172 kb on - strand, within SMa1337 at 732.227 kb on - strand, within SMa1337 at 732.271 kb on - strand, within SMa1337 at 732.310 kb on - strand, within SMa1337 at 732.396 kb on + strand, within SMa1337 at 732.450 kb on + strand, within SMa1337 at 732.451 kb on - strand, within SMa1337 at 732.466 kb on - strand, within SMa1337 at 732.466 kb on - strand, within SMa1337 at 732.546 kb on + strand at 732.546 kb on + strand at 732.546 kb on + strand at 732.547 kb on - strand at 732.552 kb on + strand at 732.631 kb on - strand at 732.648 kb on + strand at 733.001 kb on - strand, within SMa1339 at 733.057 kb on + strand, within SMa1339 at 733.213 kb on + strand, within SMa1339 at 733.213 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.295 kb on - strand, within SMa1339 at 733.295 kb on - strand, within SMa1339 at 733.385 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.519 kb on + strand, within SMa1339 at 733.520 kb on - strand, within SMa1339 at 733.618 kb on + strand at 733.618 kb on + strand at 733.619 kb on - strand at 733.619 kb on - strand at 733.619 kb on - strand at 733.622 kb on + strand at 733.623 kb on - strand at 733.623 kb on - strand at 733.623 kb on - strand at 733.658 kb on - strand at 733.666 kb on + strand at 733.667 kb on - strand at 733.788 kb on - strand at 733.849 kb on + strand, within SMa1341 at 733.931 kb on + strand, within SMa1341 at 734.065 kb on + strand, within SMa1341 at 734.102 kb on + strand, within SMa1341 at 734.157 kb on + strand, within SMa1341 at 734.197 kb on + strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.249 kb on - strand, within SMa1341 at 734.250 kb on + strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.274 kb on + strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.327 kb on + strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.437 kb on + strand, within SMa1341 at 734.438 kb on - strand, within SMa1341 at 734.677 kb on + strand at 734.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 731,829 + SMa1337 0.38 +0.0 731,829 + SMa1337 0.38 +0.7 731,830 - SMa1337 0.38 -0.6 731,830 - SMa1337 0.38 -3.1 731,830 - SMa1337 0.38 -0.1 731,830 - SMa1337 0.38 +0.5 731,928 + SMa1337 0.45 +1.0 732,006 + SMa1337 0.51 +0.2 732,007 - SMa1337 0.51 -0.5 732,016 - SMa1337 0.52 +0.6 732,016 - SMa1337 0.52 +3.2 732,089 + SMa1337 0.57 +0.4 732,171 + +0.2 732,171 + SMa1337 0.64 +4.5 732,172 - SMa1337 0.64 -0.5 732,172 - SMa1337 0.64 +0.3 732,227 - SMa1337 0.68 -1.1 732,271 - SMa1337 0.71 +0.0 732,310 - SMa1337 0.74 +0.2 732,396 + SMa1337 0.81 -1.4 732,450 + SMa1337 0.85 -0.4 732,451 - SMa1337 0.85 +1.2 732,466 - SMa1337 0.86 +0.4 732,466 - SMa1337 0.86 -1.2 732,546 + +0.5 732,546 + -1.1 732,546 + -2.0 732,547 - -0.8 732,552 + +0.2 732,631 - -3.6 732,648 + +0.7 733,001 - SMa1339 0.24 -1.4 733,057 + SMa1339 0.30 +0.0 733,213 + SMa1339 0.47 +0.2 733,213 + SMa1339 0.47 +1.8 733,294 + SMa1339 0.56 +0.6 733,294 + SMa1339 0.56 +0.9 733,294 + SMa1339 0.56 -0.9 733,295 - SMa1339 0.56 -0.5 733,295 - SMa1339 0.56 +0.9 733,385 - SMa1339 0.66 -1.3 733,421 - SMa1339 0.70 -0.8 733,421 - SMa1339 0.70 +0.9 733,421 - SMa1339 0.70 -0.3 733,519 + SMa1339 0.81 -1.1 733,520 - SMa1339 0.81 +2.0 733,618 + +0.5 733,618 + -0.6 733,619 - +0.6 733,619 - -1.1 733,619 - +0.5 733,622 + -1.6 733,623 - +1.0 733,623 - +0.3 733,623 - -2.0 733,658 - -0.1 733,666 + +1.2 733,667 - -0.4 733,788 - +2.6 733,849 + SMa1341 0.16 +0.8 733,931 + SMa1341 0.25 +1.7 734,065 + SMa1341 0.39 -0.1 734,102 + SMa1341 0.42 +1.5 734,157 + SMa1341 0.48 -0.3 734,197 + SMa1341 0.52 -1.2 734,198 - SMa1341 0.53 -0.7 734,198 - SMa1341 0.53 -0.2 734,248 + SMa1341 0.58 -0.2 734,248 + SMa1341 0.58 +0.2 734,248 + SMa1341 0.58 -0.6 734,249 - SMa1341 0.58 -1.1 734,250 + SMa1341 0.58 +0.9 734,259 - SMa1341 0.59 -0.2 734,259 - SMa1341 0.59 -0.4 734,274 + SMa1341 0.60 +0.9 734,275 - SMa1341 0.61 -0.1 734,275 - SMa1341 0.61 +0.2 734,327 + SMa1341 0.66 -0.1 734,328 - SMa1341 0.66 -2.6 734,328 - SMa1341 0.66 -0.1 734,437 + SMa1341 0.77 -0.9 734,438 - SMa1341 0.78 -0.1 734,677 + +0.9 734,678 - +0.2
Or see this region's nucleotide sequence