Strain Fitness in Sinorhizobium meliloti 1021 around SMa1326

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1323 and SMa1325 are separated by 260 nucleotidesSMa1325 and SMa1326 are separated by 73 nucleotidesSMa1326 and SMa1327 are separated by 49 nucleotides SMa1323: SMa1323 - Transcription regulator, at 721,436 to 721,804 SMa1323 SMa1325: SMa1325 - hypothetical protein, at 722,065 to 722,316 SMa1325 SMa1326: SMa1326 - hypothetical protein, at 722,390 to 723,037 SMa1326 SMa1327: SMa1327 - hydrolase, at 723,087 to 723,935 SMa1327 Position (kb) 722 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 721.474 kb on - strand, within SMa1323at 721.572 kb on - strand, within SMa1323at 721.687 kb on + strand, within SMa1323at 721.687 kb on + strand, within SMa1323at 721.768 kb on - strandat 721.823 kb on - strandat 721.918 kb on + strandat 721.918 kb on + strandat 721.918 kb on + strandat 721.919 kb on - strandat 721.922 kb on - strandat 722.206 kb on + strand, within SMa1325at 722.253 kb on - strand, within SMa1325at 722.299 kb on + strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.324 kb on + strandat 722.325 kb on - strandat 722.335 kb on + strandat 722.336 kb on - strandat 722.336 kb on - strandat 722.363 kb on + strandat 722.364 kb on - strandat 722.378 kb on + strandat 722.439 kb on + strandat 722.439 kb on + strandat 722.527 kb on + strand, within SMa1326at 722.527 kb on + strand, within SMa1326at 722.540 kb on + strand, within SMa1326at 722.541 kb on - strand, within SMa1326at 722.830 kb on + strand, within SMa1326at 722.831 kb on - strand, within SMa1326at 723.022 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.131 kb on + strandat 723.132 kb on - strandat 723.333 kb on - strand, within SMa1327at 723.333 kb on - strand, within SMa1327at 723.417 kb on + strand, within SMa1327at 723.417 kb on + strand, within SMa1327at 723.418 kb on - strand, within SMa1327at 723.418 kb on - strand, within SMa1327at 723.454 kb on + strand, within SMa1327at 723.455 kb on - strand, within SMa1327at 723.455 kb on - strand, within SMa1327at 723.455 kb on - strand, within SMa1327at 723.719 kb on - strand, within SMa1327at 723.719 kb on - strand, within SMa1327at 723.740 kb on - strand, within SMa1327at 723.772 kb on + strand, within SMa1327at 723.773 kb on - strand, within SMa1327at 723.831 kb on + strand, within SMa1327at 723.831 kb on + strand, within SMa1327at 723.832 kb on - strand, within SMa1327at 723.832 kb on - strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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721,474 - SMa1323 0.10 -2.2
721,572 - SMa1323 0.37 -0.8
721,687 + SMa1323 0.68 -2.5
721,687 + SMa1323 0.68 +0.5
721,768 - -4.2
721,823 - -1.4
721,918 + +1.0
721,918 + -1.6
721,918 + +0.8
721,919 - -0.3
721,922 - -0.3
722,206 + SMa1325 0.56 +0.5
722,253 - SMa1325 0.75 +0.5
722,299 + -0.6
722,300 - -1.2
722,300 - -1.6
722,300 - +0.2
722,300 - +0.6
722,300 - -1.4
722,324 + -1.6
722,325 - +1.3
722,335 + +3.0
722,336 - -0.9
722,336 - +0.1
722,363 + -2.3
722,364 - -0.9
722,378 + +2.3
722,439 + -0.8
722,439 + -1.3
722,527 + SMa1326 0.21 -1.5
722,527 + SMa1326 0.21 -2.5
722,540 + SMa1326 0.23 -0.1
722,541 - SMa1326 0.23 -0.5
722,830 + SMa1326 0.68 -0.4
722,831 - SMa1326 0.68 -0.1
723,022 + +0.6
723,040 + +0.7
723,040 + -0.8
723,040 + -0.5
723,040 + -2.2
723,040 + +1.7
723,041 - -3.2
723,041 - -1.5
723,041 - +0.4
723,041 - +1.9
723,041 - +0.4
723,041 - -0.3
723,131 + -0.0
723,132 - +2.3
723,333 - SMa1327 0.29 +0.2
723,333 - SMa1327 0.29 -0.2
723,417 + SMa1327 0.39 -1.2
723,417 + SMa1327 0.39 -0.5
723,418 - SMa1327 0.39 +0.8
723,418 - SMa1327 0.39 -0.1
723,454 + SMa1327 0.43 +0.3
723,455 - SMa1327 0.43 +0.3
723,455 - SMa1327 0.43 -1.3
723,455 - SMa1327 0.43 +0.6
723,719 - SMa1327 0.74 +2.0
723,719 - SMa1327 0.74 +0.2
723,740 - SMa1327 0.77 -0.8
723,772 + SMa1327 0.81 -2.8
723,773 - SMa1327 0.81 -0.1
723,831 + SMa1327 0.88 -0.1
723,831 + SMa1327 0.88 -0.8
723,832 - SMa1327 0.88 -1.4
723,832 - SMa1327 0.88 -1.6
723,836 + SMa1327 0.88 -0.8
723,836 + SMa1327 0.88 +0.4
723,836 + SMa1327 0.88 -0.1
723,836 + SMa1327 0.88 -1.0
723,836 + SMa1327 0.88 +0.8
723,836 + SMa1327 0.88 -1.2
723,836 + SMa1327 0.88 +0.2
723,837 - SMa1327 0.88 -0.6
723,837 - SMa1327 0.88 -0.6
723,837 - SMa1327 0.88 +2.3
723,837 - SMa1327 0.88 +0.2
723,837 - SMa1327 0.88 -1.8
723,837 - SMa1327 0.88 +0.6
723,837 - SMa1327 0.88 -2.4
723,837 - SMa1327 0.88 +0.3
723,837 - SMa1327 0.88 -0.3
723,837 - SMa1327 0.88 -0.6
723,837 - SMa1327 0.88 -1.0
723,837 - SMa1327 0.88 +0.1
723,997 + +0.8

Or see this region's nucleotide sequence