Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1306 and SMa1308 overlap by 1 nucleotides SMa1308 and SMa1310 are separated by 4 nucleotides SMa1310 and SMa1311 overlap by 4 nucleotides
SMa1306: SMa1306 - VirB9 type IV secretion protein, at 713,420 to 714,274
SMa1306
SMa1308: SMa1308 - VirB8 type IV secretion protein, at 714,274 to 714,945
SMa1308
SMa1310: SMa1310 - VirB7-like protein, at 714,950 to 715,264
SMa1310
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 713.987 kb on - strand, within SMa1306 at 714.153 kb on + strand, within SMa1306 at 714.154 kb on - strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.266 kb on - strand at 714.368 kb on + strand, within SMa1308 at 714.437 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.832 kb on + strand, within SMa1308 at 714.917 kb on + strand at 714.917 kb on + strand at 714.917 kb on + strand at 714.918 kb on - strand at 714.970 kb on - strand at 715.091 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310 at 715.392 kb on - strand, within SMa1311 at 715.392 kb on - strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.556 kb on - strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.725 kb on - strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.072 kb on + strand, within SMa1311 at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 713,987 - SMa1306 0.66 -1.0 714,153 + SMa1306 0.86 -0.7 714,154 - SMa1306 0.86 -0.7 714,162 + SMa1306 0.87 +0.3 714,162 + SMa1306 0.87 +1.7 714,163 - SMa1306 0.87 +1.0 714,163 - SMa1306 0.87 +0.4 714,266 - +0.4 714,368 + SMa1308 0.14 -3.5 714,437 + SMa1308 0.24 -0.3 714,516 + SMa1308 0.36 +0.1 714,516 + SMa1308 0.36 -0.2 714,633 - SMa1308 0.53 -0.1 714,633 - SMa1308 0.53 -2.4 714,653 + SMa1308 0.56 -1.0 714,653 + SMa1308 0.56 -1.1 714,832 + SMa1308 0.83 -1.0 714,917 + +0.1 714,917 + -2.7 714,917 + +0.4 714,918 - +1.7 714,970 - +1.2 715,091 - SMa1310 0.45 +0.2 715,223 - SMa1310 0.87 +1.8 715,223 - SMa1310 0.87 +0.5 715,392 - SMa1311 0.14 +1.4 715,392 - SMa1311 0.14 -1.4 715,445 + SMa1311 0.20 -0.9 715,445 + SMa1311 0.20 -1.2 715,446 - SMa1311 0.20 +0.6 715,446 - SMa1311 0.20 -1.1 715,454 + SMa1311 0.20 +0.3 715,454 + SMa1311 0.20 -0.8 715,454 + SMa1311 0.20 -2.7 715,454 + SMa1311 0.20 -0.1 715,454 + SMa1311 0.20 +3.4 715,455 - SMa1311 0.21 +0.3 715,455 - SMa1311 0.21 -0.1 715,455 - SMa1311 0.21 -0.1 715,509 + SMa1311 0.26 +0.1 715,509 + SMa1311 0.26 -0.0 715,509 + SMa1311 0.26 +1.2 715,510 - SMa1311 0.26 -1.2 715,510 - SMa1311 0.26 +0.2 715,556 - SMa1311 0.31 -0.3 715,722 + SMa1311 0.49 +0.1 715,722 + SMa1311 0.49 +0.1 715,725 - SMa1311 0.49 +0.2 715,943 + SMa1311 0.72 -2.2 715,943 + SMa1311 0.72 +0.4 715,943 + SMa1311 0.72 -0.8 715,944 - SMa1311 0.73 +0.1 715,944 - SMa1311 0.73 -0.8 716,061 - SMa1311 0.85 -0.5 716,061 - SMa1311 0.85 -0.8 716,072 + SMa1311 0.86 +3.2 716,192 + +0.2 716,192 + -1.0 716,192 + +1.7 716,192 + +0.4 716,193 - +0.2 716,193 - +0.2 716,193 - +0.3
Or see this region's nucleotide sequence