Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1303 and SMa1306 are separated by 9 nucleotides SMa1306 and SMa1308 overlap by 1 nucleotides SMa1308 and SMa1310 are separated by 4 nucleotides SMa1310 and SMa1311 overlap by 4 nucleotides
SMa1303: SMa1303 - VirB10-like transmembrane secretion protein, at 712,238 to 713,410
SMa1303
SMa1306: SMa1306 - VirB9 type IV secretion protein, at 713,420 to 714,274
SMa1306
SMa1308: SMa1308 - VirB8 type IV secretion protein, at 714,274 to 714,945
SMa1308
SMa1310: SMa1310 - VirB7-like protein, at 714,950 to 715,264
SMa1310
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 712.506 kb on + strand, within SMa1303 at 712.506 kb on + strand, within SMa1303 at 712.507 kb on - strand, within SMa1303 at 712.578 kb on + strand, within SMa1303 at 712.578 kb on + strand, within SMa1303 at 712.711 kb on - strand, within SMa1303 at 712.838 kb on - strand, within SMa1303 at 713.062 kb on + strand, within SMa1303 at 713.064 kb on + strand, within SMa1303 at 713.065 kb on - strand, within SMa1303 at 713.199 kb on - strand, within SMa1303 at 713.422 kb on - strand at 713.422 kb on - strand at 713.479 kb on + strand at 713.483 kb on - strand at 713.508 kb on + strand, within SMa1306 at 713.518 kb on + strand, within SMa1306 at 713.576 kb on + strand, within SMa1306 at 713.643 kb on + strand, within SMa1306 at 713.643 kb on + strand, within SMa1306 at 713.643 kb on + strand, within SMa1306 at 713.644 kb on - strand, within SMa1306 at 713.644 kb on - strand, within SMa1306 at 713.703 kb on + strand, within SMa1306 at 713.766 kb on + strand, within SMa1306 at 713.766 kb on + strand, within SMa1306 at 713.874 kb on + strand, within SMa1306 at 713.884 kb on - strand, within SMa1306 at 713.889 kb on + strand, within SMa1306 at 713.944 kb on - strand, within SMa1306 at 713.947 kb on + strand, within SMa1306 at 713.987 kb on - strand, within SMa1306 at 714.153 kb on + strand, within SMa1306 at 714.154 kb on - strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.266 kb on - strand at 714.368 kb on + strand, within SMa1308 at 714.437 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.832 kb on + strand, within SMa1308 at 714.917 kb on + strand at 714.917 kb on + strand at 714.917 kb on + strand at 714.918 kb on - strand at 714.970 kb on - strand at 715.091 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 712,506 + SMa1303 0.23 -1.8 712,506 + SMa1303 0.23 +0.4 712,507 - SMa1303 0.23 +1.3 712,578 + SMa1303 0.29 +1.9 712,578 + SMa1303 0.29 +1.4 712,711 - SMa1303 0.40 -1.9 712,838 - SMa1303 0.51 +0.4 713,062 + SMa1303 0.70 -0.9 713,064 + SMa1303 0.70 -1.6 713,065 - SMa1303 0.71 +0.8 713,199 - SMa1303 0.82 -0.9 713,422 - +3.5 713,422 - +0.9 713,479 + +0.8 713,483 - -0.9 713,508 + SMa1306 0.10 +0.3 713,518 + SMa1306 0.11 -0.8 713,576 + SMa1306 0.18 -1.3 713,643 + SMa1306 0.26 -1.6 713,643 + SMa1306 0.26 +2.2 713,643 + SMa1306 0.26 -0.1 713,644 - SMa1306 0.26 +0.2 713,644 - SMa1306 0.26 -0.4 713,703 + SMa1306 0.33 -0.1 713,766 + SMa1306 0.40 -1.1 713,766 + SMa1306 0.40 +1.2 713,874 + SMa1306 0.53 -0.1 713,884 - SMa1306 0.54 +1.2 713,889 + SMa1306 0.55 +0.4 713,944 - SMa1306 0.61 -2.6 713,947 + SMa1306 0.62 -1.4 713,987 - SMa1306 0.66 -1.0 714,153 + SMa1306 0.86 -0.7 714,154 - SMa1306 0.86 -0.7 714,162 + SMa1306 0.87 +0.3 714,162 + SMa1306 0.87 +1.7 714,163 - SMa1306 0.87 +1.0 714,163 - SMa1306 0.87 +0.4 714,266 - +0.4 714,368 + SMa1308 0.14 -3.5 714,437 + SMa1308 0.24 -0.3 714,516 + SMa1308 0.36 +0.1 714,516 + SMa1308 0.36 -0.2 714,633 - SMa1308 0.53 -0.1 714,633 - SMa1308 0.53 -2.4 714,653 + SMa1308 0.56 -1.0 714,653 + SMa1308 0.56 -1.1 714,832 + SMa1308 0.83 -1.0 714,917 + +0.1 714,917 + -2.7 714,917 + +0.4 714,918 - +1.7 714,970 - +1.2 715,091 - SMa1310 0.45 +0.2 715,223 - SMa1310 0.87 +1.8 715,223 - SMa1310 0.87 +0.5
Or see this region's nucleotide sequence