Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1037 and SMa1038 are separated by 14 nucleotides SMa1038 and SMa1041 are separated by 6 nucleotides SMa1041 and SMa1043 are separated by 19 nucleotides SMa1043 and SMa1045 are separated by 92 nucleotides
SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975
SMa1037
SMa1038: SMa1038 - copper-containing oxidase, at 571,990 to 573,339
SMa1038
SMa1041: SMa1041 - copper oxidase, at 573,346 to 573,858
SMa1041
SMa1043: SMa1043 - hypothetical protein, at 573,878 to 574,162
SMa1043
SMa1045: SMa1045 - hypothetical protein, at 574,255 to 574,542
SMa1045
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 571.451 kb on + strand at 571.452 kb on - strand, within SMa1037 at 571.474 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.609 kb on + strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.770 kb on - strand, within SMa1037 at 572.064 kb on + strand at 572.119 kb on - strand at 572.141 kb on - strand at 572.142 kb on + strand, within SMa1038 at 572.143 kb on - strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.492 kb on - strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.670 kb on + strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.685 kb on + strand, within SMa1038 at 572.686 kb on - strand, within SMa1038 at 572.815 kb on - strand, within SMa1038 at 573.043 kb on + strand, within SMa1038 at 573.044 kb on - strand, within SMa1038 at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.367 kb on - strand at 573.367 kb on - strand at 573.389 kb on + strand at 573.389 kb on + strand at 573.389 kb on + strand at 574.141 kb on + strand at 574.141 kb on + strand at 574.142 kb on - strand at 574.160 kb on + strand at 574.160 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 571,451 + +1.1 571,452 - SMa1037 0.64 -0.3 571,474 + SMa1037 0.66 -0.1 571,607 + SMa1037 0.75 +1.5 571,607 + SMa1037 0.75 +0.2 571,609 + SMa1037 0.75 -2.0 571,610 - SMa1037 0.75 -3.4 571,610 - SMa1037 0.75 -0.2 571,610 - SMa1037 0.75 -1.2 571,770 - SMa1037 0.86 +0.7 572,064 + +1.0 572,119 - -3.7 572,141 - +1.1 572,142 + SMa1038 0.11 -2.0 572,143 - SMa1038 0.11 +3.1 572,491 + SMa1038 0.37 +0.2 572,491 + SMa1038 0.37 +0.1 572,491 + SMa1038 0.37 +1.0 572,492 - SMa1038 0.37 -3.2 572,614 + SMa1038 0.46 +0.3 572,614 + SMa1038 0.46 -0.5 572,614 + SMa1038 0.46 -1.3 572,615 - SMa1038 0.46 +1.5 572,615 - SMa1038 0.46 +0.5 572,635 + SMa1038 0.48 +4.4 572,635 + SMa1038 0.48 -1.8 572,635 + SMa1038 0.48 -2.2 572,636 - SMa1038 0.48 +0.3 572,636 - SMa1038 0.48 -1.2 572,670 + SMa1038 0.50 -1.3 572,671 - SMa1038 0.50 -0.7 572,671 - SMa1038 0.50 +0.6 572,671 - SMa1038 0.50 +0.5 572,671 - SMa1038 0.50 +0.3 572,685 + SMa1038 0.51 -0.4 572,686 - SMa1038 0.52 -0.3 572,815 - SMa1038 0.61 -0.8 573,043 + SMa1038 0.78 +0.2 573,044 - SMa1038 0.78 -0.3 573,324 + -1.4 573,324 + -0.3 573,324 + -1.9 573,324 + +0.7 573,324 + -0.2 573,325 - +0.4 573,325 - -2.4 573,325 - +0.4 573,366 + -0.5 573,366 + -1.7 573,366 + -1.2 573,366 + +0.5 573,367 - -2.1 573,367 - -0.1 573,389 + +0.7 573,389 + -0.2 573,389 + +0.3 574,141 + -2.9 574,141 + +0.8 574,142 - -0.7 574,160 + -1.4 574,160 + -2.2
Or see this region's nucleotide sequence