Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0958 and SMa0959 overlap by 4 nucleotides SMa0959 and SMa0961 are separated by 20 nucleotides SMa0961 and SMa0964 are separated by 47 nucleotides SMa0964 and SMa0967 are separated by 148 nucleotides
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
SMa0959: SMa0959 - 3-ketoacyl-ACP reductase, at 537,885 to 538,661
SMa0959
SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404
SMa0961
SMa0964: SMa0964 - hypothetical protein, at 539,452 to 539,682
SMa0964
SMa0967: SMa0967 - hypothetical protein, at 539,831 to 540,751
SMa0967
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.813 kb on - strand at 538.102 kb on + strand, within SMa0959 at 538.102 kb on + strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.334 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.589 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.702 kb on - strand at 538.702 kb on - strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.704 kb on - strand at 538.705 kb on + strand at 538.706 kb on - strand at 538.801 kb on + strand, within SMa0961 at 538.866 kb on - strand, within SMa0961 at 538.934 kb on - strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.089 kb on - strand, within SMa0961 at 539.116 kb on - strand, within SMa0961 at 539.136 kb on + strand, within SMa0961 at 539.151 kb on + strand, within SMa0961 at 539.272 kb on + strand, within SMa0961 at 539.273 kb on - strand, within SMa0961 at 539.317 kb on + strand, within SMa0961 at 539.328 kb on + strand, within SMa0961 at 539.482 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.959 kb on - strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 540.014 kb on + strand, within SMa0967 at 540.018 kb on + strand, within SMa0967 at 540.018 kb on + strand, within SMa0967 at 540.019 kb on - strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.115 kb on - strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.145 kb on - strand, within SMa0967 at 540.261 kb on + strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.375 kb on + strand, within SMa0967 at 540.376 kb on - strand, within SMa0967
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 537,813 - -0.9 538,102 + SMa0959 0.28 -0.2 538,102 + SMa0959 0.28 -1.3 538,103 - SMa0959 0.28 +0.0 538,103 - SMa0959 0.28 -1.0 538,103 - SMa0959 0.28 -0.8 538,171 + SMa0959 0.37 -0.3 538,171 + SMa0959 0.37 +0.3 538,334 + SMa0959 0.58 -0.1 538,374 + SMa0959 0.63 -0.7 538,374 + SMa0959 0.63 -0.7 538,374 + SMa0959 0.63 -0.6 538,375 - SMa0959 0.63 -1.5 538,375 - SMa0959 0.63 +1.0 538,375 - SMa0959 0.63 +0.3 538,508 - SMa0959 0.80 -0.2 538,508 - SMa0959 0.80 +0.2 538,589 + +0.5 538,701 + +1.2 538,701 + +0.1 538,701 + +0.6 538,702 - -0.6 538,702 - -2.1 538,703 + -1.4 538,703 + -0.2 538,703 + -0.0 538,703 + +0.2 538,703 + -0.8 538,704 - -0.0 538,705 + -2.1 538,706 - +0.1 538,801 + SMa0961 0.16 +1.0 538,866 - SMa0961 0.25 -2.5 538,934 - SMa0961 0.35 -0.6 539,088 + SMa0961 0.56 +1.4 539,088 + SMa0961 0.56 -2.4 539,088 + SMa0961 0.56 -2.1 539,089 - SMa0961 0.56 +1.0 539,116 - SMa0961 0.60 -2.4 539,136 + SMa0961 0.63 -0.2 539,151 + SMa0961 0.65 +1.3 539,272 + SMa0961 0.82 -0.2 539,273 - SMa0961 0.82 +1.8 539,317 + SMa0961 0.88 -0.4 539,328 + SMa0961 0.89 +1.2 539,482 + SMa0964 0.13 +0.0 539,543 + SMa0964 0.39 -1.1 539,543 + SMa0964 0.39 +1.9 539,543 + SMa0964 0.39 -0.0 539,959 - SMa0967 0.14 -2.9 539,985 + SMa0967 0.17 +0.9 539,985 + SMa0967 0.17 +0.1 539,985 + SMa0967 0.17 -0.2 540,014 + SMa0967 0.20 +1.1 540,018 + SMa0967 0.20 +0.0 540,018 + SMa0967 0.20 -0.3 540,019 - SMa0967 0.20 +0.0 540,114 + SMa0967 0.31 +1.1 540,114 + SMa0967 0.31 -0.1 540,114 + SMa0967 0.31 +0.2 540,114 + SMa0967 0.31 -0.4 540,115 - SMa0967 0.31 -0.8 540,144 + SMa0967 0.34 -0.4 540,144 + SMa0967 0.34 -2.1 540,144 + SMa0967 0.34 -0.8 540,144 + SMa0967 0.34 +1.7 540,145 - SMa0967 0.34 +1.7 540,261 + SMa0967 0.47 +0.6 540,337 - SMa0967 0.55 +0.5 540,337 - SMa0967 0.55 +0.7 540,337 - SMa0967 0.55 -0.1 540,375 + SMa0967 0.59 -2.6 540,376 - SMa0967 0.59 +0.2
Or see this region's nucleotide sequence