Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0794 and SMa0796 are separated by 5 nucleotides SMa0796 and SMa0797 are separated by 5 nucleotides SMa0797 and SMa0799 are separated by 37 nucleotides
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
SMa0797: SMa0797 - hypothetical protein, at 435,497 to 435,823
SMa0797
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
Position (kb) 434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 433.154 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.183 kb on - strand, within SMa0794 at 433.312 kb on + strand, within SMa0794 at 433.313 kb on - strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand at 433.679 kb on - strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.741 kb on + strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.928 kb on - strand at 433.928 kb on - strand at 434.021 kb on - strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.047 kb on - strand at 434.047 kb on - strand at 434.337 kb on + strand, within SMa0796 at 434.337 kb on + strand, within SMa0796 at 434.349 kb on + strand, within SMa0796 at 434.353 kb on - strand, within SMa0796 at 434.361 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.731 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.329 kb on + strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.333 kb on + strand, within SMa0796 at 435.334 kb on - strand, within SMa0796 at 435.420 kb on + strand at 435.519 kb on - strand at 435.519 kb on - strand at 435.545 kb on - strand, within SMa0797 at 435.655 kb on + strand, within SMa0797 at 435.656 kb on - strand, within SMa0797 at 435.665 kb on + strand, within SMa0797 at 435.772 kb on + strand, within SMa0797 at 435.822 kb on - strand at 435.866 kb on + strand at 435.866 kb on + strand at 435.872 kb on - strand at 435.872 kb on - strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.906 kb on - strand at 435.906 kb on - strand at 435.906 kb on - strand at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.207 kb on - strand, within SMa0799 at 436.225 kb on - strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.329 kb on + strand, within SMa0799 at 436.330 kb on - strand, within SMa0799 at 436.381 kb on + strand, within SMa0799 at 436.443 kb on - strand, within SMa0799
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 433,154 + SMa0794 0.17 -0.8 433,182 + SMa0794 0.19 +0.5 433,182 + SMa0794 0.19 -2.2 433,183 - SMa0794 0.19 +0.1 433,312 + SMa0794 0.32 -0.2 433,313 - SMa0794 0.32 +0.7 433,678 + SMa0794 0.67 +0.5 433,678 + SMa0794 0.67 -0.3 433,678 + +1.1 433,679 - SMa0794 0.67 +0.6 433,730 + SMa0794 0.72 +1.0 433,730 + SMa0794 0.72 -1.2 433,730 + SMa0794 0.72 -0.7 433,730 + SMa0794 0.72 -0.9 433,730 + SMa0794 0.72 -1.7 433,731 - SMa0794 0.72 +0.1 433,731 - SMa0794 0.72 -0.3 433,731 - SMa0794 0.72 +4.1 433,733 - SMa0794 0.72 +0.4 433,733 - SMa0794 0.72 +0.5 433,736 - SMa0794 0.72 +0.4 433,736 - SMa0794 0.72 +1.1 433,736 - SMa0794 0.72 +0.7 433,736 - SMa0794 0.72 -0.4 433,736 - SMa0794 0.72 +0.8 433,736 - SMa0794 0.72 +0.3 433,741 + SMa0794 0.73 -0.9 433,904 - SMa0794 0.89 -0.9 433,904 - SMa0794 0.89 -0.0 433,904 - SMa0794 0.89 -0.7 433,928 - -0.6 433,928 - +1.9 434,021 - +0.3 434,046 + +0.5 434,046 + +0.0 434,046 + +0.5 434,047 - -1.2 434,047 - -0.6 434,337 + SMa0796 0.21 -0.1 434,337 + SMa0796 0.21 -1.2 434,349 + SMa0796 0.22 +0.8 434,353 - SMa0796 0.22 -0.2 434,361 + SMa0796 0.23 -3.3 434,394 + SMa0796 0.25 -0.8 434,394 + SMa0796 0.25 -0.5 434,394 + SMa0796 0.25 +0.5 434,394 + SMa0796 0.25 -0.4 434,395 - SMa0796 0.25 -0.7 434,395 - SMa0796 0.25 -0.3 434,693 - SMa0796 0.45 +3.0 434,693 - SMa0796 0.45 +0.0 434,693 - SMa0796 0.45 +0.4 434,726 + SMa0796 0.48 +1.9 434,726 + SMa0796 0.48 +0.4 434,728 + SMa0796 0.48 -0.6 434,728 + SMa0796 0.48 +0.5 434,728 + SMa0796 0.48 -1.3 434,728 + SMa0796 0.48 -1.3 434,728 + -1.2 434,728 + SMa0796 0.48 -0.0 434,728 + SMa0796 0.48 +1.9 434,728 + SMa0796 0.48 +0.3 434,729 - SMa0796 0.48 +0.1 434,729 - SMa0796 0.48 +0.8 434,731 + SMa0796 0.48 +0.4 435,105 + SMa0796 0.74 +1.2 435,105 + SMa0796 0.74 -1.0 435,105 + SMa0796 0.74 +2.1 435,329 + SMa0796 0.89 -3.2 435,330 - SMa0796 0.89 +0.8 435,330 - SMa0796 0.89 +1.0 435,333 + SMa0796 0.89 -1.3 435,334 - SMa0796 0.89 -0.3 435,420 + +0.7 435,519 - -1.7 435,519 - -0.4 435,545 - SMa0797 0.15 +0.0 435,655 + SMa0797 0.48 -0.9 435,656 - SMa0797 0.49 -0.0 435,665 + SMa0797 0.51 +2.1 435,772 + SMa0797 0.84 -1.2 435,822 - -0.1 435,866 + -2.3 435,866 + -0.5 435,872 - +3.3 435,872 - +2.0 435,905 + -0.9 435,905 + +0.2 435,905 + +0.1 435,906 - -0.2 435,906 - -1.0 435,906 - +1.3 436,062 - SMa0799 0.20 -1.2 436,062 - SMa0799 0.20 -0.2 436,062 - SMa0799 0.20 +0.8 436,062 - SMa0799 0.20 +0.2 436,207 - SMa0799 0.34 -0.6 436,225 - SMa0799 0.36 +0.8 436,227 + SMa0799 0.36 -0.7 436,227 + SMa0799 0.36 +0.4 436,227 + SMa0799 0.36 +0.5 436,228 - SMa0799 0.36 +0.6 436,228 - SMa0799 0.36 -0.1 436,329 + SMa0799 0.46 -0.2 436,330 - SMa0799 0.46 +1.2 436,381 + SMa0799 0.51 +0.3 436,443 - SMa0799 0.58 -4.1
Or see this region's nucleotide sequence