Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0520 and SMa0522 are separated by 128 nucleotides SMa0522 and SMa0523 overlap by 20 nucleotides SMa0523 and SMa0525 overlap by 4 nucleotides
SMa0520: SMa0520 - RpiR family transcriptional regulator, at 280,693 to 281,535
SMa0520
SMa0522: SMa0522 - ABC transporter substrate-binding protein, at 281,664 to 282,392
SMa0522
SMa0523: SMa0523 - ABC transporter substrate-binding protein, at 282,373 to 282,777
SMa0523
SMa0525: SMa0525 - ABC transporter permease, at 282,774 to 284,579
SMa0525
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.623 kb on + strand at 281.735 kb on + strand at 281.793 kb on + strand, within SMa0522 at 281.794 kb on - strand, within SMa0522 at 281.794 kb on - strand, within SMa0522 at 281.844 kb on + strand, within SMa0522 at 281.873 kb on + strand, within SMa0522 at 281.873 kb on + strand, within SMa0522 at 281.874 kb on - strand, within SMa0522 at 281.946 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.095 kb on + strand, within SMa0522 at 282.095 kb on + strand, within SMa0522 at 282.251 kb on + strand, within SMa0522 at 282.258 kb on + strand, within SMa0522 at 282.259 kb on - strand, within SMa0522 at 282.269 kb on - strand, within SMa0522 at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.329 kb on - strand at 282.329 kb on - strand at 282.329 kb on - strand at 282.390 kb on + strand at 282.390 kb on + strand at 282.430 kb on + strand, within SMa0523 at 282.479 kb on + strand, within SMa0523 at 282.510 kb on - strand, within SMa0523 at 282.510 kb on - strand, within SMa0523 at 282.532 kb on - strand, within SMa0523 at 282.571 kb on - strand, within SMa0523 at 282.628 kb on + strand, within SMa0523 at 282.628 kb on + strand, within SMa0523 at 282.628 kb on + strand, within SMa0523 at 282.629 kb on - strand, within SMa0523 at 282.629 kb on - strand, within SMa0523 at 282.839 kb on + strand at 282.840 kb on - strand at 282.840 kb on - strand at 282.840 kb on - strand at 282.943 kb on + strand at 283.046 kb on + strand, within SMa0525 at 283.047 kb on - strand, within SMa0525 at 283.049 kb on + strand, within SMa0525 at 283.049 kb on + strand, within SMa0525 at 283.050 kb on - strand, within SMa0525 at 283.050 kb on - strand, within SMa0525 at 283.050 kb on - strand, within SMa0525 at 283.050 kb on - strand, within SMa0525 at 283.273 kb on - strand, within SMa0525 at 283.332 kb on + strand, within SMa0525 at 283.332 kb on + strand, within SMa0525 at 283.336 kb on - strand, within SMa0525 at 283.336 kb on - strand, within SMa0525 at 283.350 kb on - strand, within SMa0525 at 283.443 kb on - strand, within SMa0525 at 283.448 kb on - strand, within SMa0525 at 283.576 kb on - strand, within SMa0525 at 283.611 kb on + strand, within SMa0525 at 283.612 kb on - strand, within SMa0525
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 281,623 + -1.7 281,735 + +0.9 281,793 + SMa0522 0.18 +0.7 281,794 - SMa0522 0.18 -0.1 281,794 - SMa0522 0.18 +1.8 281,844 + SMa0522 0.25 -1.8 281,873 + SMa0522 0.29 +1.6 281,873 + SMa0522 0.29 -0.6 281,874 - SMa0522 0.29 +0.5 281,946 + SMa0522 0.39 -1.3 282,006 + SMa0522 0.47 +0.1 282,006 + SMa0522 0.47 +1.7 282,006 + SMa0522 0.47 +1.5 282,006 + SMa0522 0.47 -2.4 282,007 - SMa0522 0.47 +0.0 282,007 - SMa0522 0.47 -0.2 282,007 - SMa0522 0.47 +0.2 282,093 + SMa0522 0.59 -0.1 282,093 + SMa0522 0.59 +1.1 282,093 + SMa0522 0.59 +0.2 282,093 + SMa0522 0.59 -0.5 282,093 + SMa0522 0.59 -2.7 282,093 + SMa0522 0.59 -0.1 282,093 + SMa0522 0.59 -2.1 282,095 + SMa0522 0.59 -0.1 282,095 + SMa0522 0.59 -0.7 282,251 + SMa0522 0.81 -0.8 282,258 + SMa0522 0.81 -0.4 282,259 - SMa0522 0.82 -1.7 282,269 - SMa0522 0.83 +0.2 282,328 + -2.0 282,328 + +0.9 282,328 + +0.4 282,328 + -0.8 282,328 + -0.7 282,329 - -1.5 282,329 - -0.8 282,329 - -0.7 282,390 + +0.9 282,390 + +0.5 282,430 + SMa0523 0.14 +0.5 282,479 + SMa0523 0.26 +0.6 282,510 - SMa0523 0.34 -1.6 282,510 - SMa0523 0.34 -0.3 282,532 - SMa0523 0.39 +1.2 282,571 - SMa0523 0.49 +0.2 282,628 + SMa0523 0.63 -0.5 282,628 + SMa0523 0.63 +0.6 282,628 + SMa0523 0.63 +1.7 282,629 - SMa0523 0.63 +2.0 282,629 - SMa0523 0.63 +1.1 282,839 + -0.7 282,840 - +1.7 282,840 - -1.2 282,840 - -0.3 282,943 + -0.4 283,046 + SMa0525 0.15 -1.0 283,047 - SMa0525 0.15 -0.4 283,049 + SMa0525 0.15 -0.5 283,049 + SMa0525 0.15 +0.9 283,050 - SMa0525 0.15 -0.4 283,050 - SMa0525 0.15 -0.2 283,050 - SMa0525 0.15 +0.2 283,050 - SMa0525 0.15 +0.1 283,273 - SMa0525 0.28 -0.3 283,332 + SMa0525 0.31 -0.6 283,332 + SMa0525 0.31 +1.6 283,336 - SMa0525 0.31 +0.3 283,336 - SMa0525 0.31 -1.8 283,350 - SMa0525 0.32 -0.2 283,443 - SMa0525 0.37 +0.5 283,448 - SMa0525 0.37 -1.1 283,576 - SMa0525 0.44 -0.7 283,611 + SMa0525 0.46 -0.4 283,612 - SMa0525 0.46 -0.1
Or see this region's nucleotide sequence