Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0499 and SMa0501 are separated by 42 nucleotides SMa0501 and SMa0503 are separated by 1 nucleotides SMa0503 and SMa0506 are separated by 57 nucleotides SMa0506 and SMa0508 are separated by 49 nucleotides
SMa0499: SMa0499 - hypothetical protein, at 272,059 to 272,691
SMa0499
SMa0501: SMa0501 - ABC transporter permease, at 272,734 to 273,420
SMa0501
SMa0503: SMa0503 - ABC transporter permease, at 273,422 to 274,078
SMa0503
SMa0506: SMa0506 - ABC transporter periplasmic substrate-binding protein, at 274,136 to 274,933
SMa0506
SMa0508: SMa0508 - ABC transporter ATP-binding protein, at 274,983 to 275,714
SMa0508
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 272.515 kb on - strand, within SMa0499 at 272.569 kb on + strand, within SMa0499 at 272.569 kb on + strand, within SMa0499 at 272.569 kb on + strand, within SMa0499 at 272.569 kb on + strand, within SMa0499 at 272.569 kb on + strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.570 kb on - strand, within SMa0499 at 272.689 kb on + strand at 272.690 kb on - strand at 272.740 kb on + strand at 272.740 kb on + strand at 272.740 kb on + strand at 272.740 kb on + strand at 272.741 kb on - strand at 272.742 kb on + strand at 272.742 kb on + strand at 272.742 kb on + strand at 272.742 kb on + strand at 272.743 kb on - strand at 272.743 kb on - strand at 272.743 kb on - strand at 272.743 kb on - strand at 272.743 kb on - strand at 272.743 kb on - strand at 272.770 kb on + strand at 272.771 kb on - strand at 272.912 kb on - strand, within SMa0501 at 273.120 kb on + strand at 273.120 kb on + strand, within SMa0501 at 273.120 kb on + strand, within SMa0501 at 273.142 kb on + strand, within SMa0501 at 273.143 kb on - strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.462 kb on - strand at 273.462 kb on - strand at 273.462 kb on - strand at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.638 kb on + strand, within SMa0503 at 273.639 kb on - strand, within SMa0503 at 273.800 kb on + strand, within SMa0503 at 273.905 kb on - strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 274.234 kb on + strand, within SMa0506 at 274.454 kb on + strand, within SMa0506 at 274.493 kb on + strand, within SMa0506 at 274.494 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.776 kb on - strand, within SMa0506 at 274.789 kb on - strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 275.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 272,515 - SMa0499 0.72 +4.6 272,569 + SMa0499 0.81 -0.9 272,569 + SMa0499 0.81 -1.3 272,569 + SMa0499 0.81 -0.1 272,569 + SMa0499 0.81 -0.6 272,569 + SMa0499 0.81 -0.3 272,570 - SMa0499 0.81 -1.9 272,570 - SMa0499 0.81 -0.9 272,570 - SMa0499 0.81 -0.8 272,570 - SMa0499 0.81 +2.0 272,570 - SMa0499 0.81 +0.8 272,570 - SMa0499 0.81 +0.2 272,689 + -0.2 272,690 - +1.0 272,740 + -0.8 272,740 + -0.6 272,740 + -0.7 272,740 + +1.0 272,741 - +0.2 272,742 + -0.5 272,742 + -0.8 272,742 + +0.6 272,742 + +0.1 272,743 - -1.8 272,743 - +1.6 272,743 - +0.3 272,743 - +1.6 272,743 - +0.1 272,743 - -0.4 272,770 + +0.2 272,771 - -2.9 272,912 - SMa0501 0.26 +1.5 273,120 + +1.2 273,120 + SMa0501 0.56 -1.1 273,120 + SMa0501 0.56 -0.4 273,142 + SMa0501 0.59 +0.4 273,143 - SMa0501 0.60 -1.5 273,325 + SMa0501 0.86 -1.4 273,325 + SMa0501 0.86 +0.3 273,325 + SMa0501 0.86 +0.3 273,326 - SMa0501 0.86 -0.8 273,326 - SMa0501 0.86 -0.2 273,462 - +0.0 273,462 - -0.9 273,462 - -0.7 273,584 + SMa0503 0.25 -0.8 273,584 + SMa0503 0.25 +1.2 273,584 + SMa0503 0.25 -0.6 273,585 - SMa0503 0.25 +0.2 273,585 - SMa0503 0.25 -0.7 273,585 - SMa0503 0.25 -2.7 273,635 + SMa0503 0.32 -1.0 273,635 + SMa0503 0.32 -3.5 273,638 + SMa0503 0.33 -0.6 273,639 - SMa0503 0.33 +0.9 273,800 + SMa0503 0.58 -3.0 273,905 - SMa0503 0.74 +0.0 273,998 + SMa0503 0.88 -0.2 273,998 + SMa0503 0.88 -3.1 274,234 + SMa0506 0.12 -0.1 274,454 + SMa0506 0.40 -1.9 274,493 + SMa0506 0.45 -0.4 274,494 - SMa0506 0.45 -0.7 274,716 - SMa0506 0.73 +0.7 274,716 - SMa0506 0.73 -0.5 274,716 - SMa0506 0.73 -0.4 274,776 - SMa0506 0.80 -2.0 274,789 - SMa0506 0.82 -0.1 274,790 + SMa0506 0.82 +0.2 274,790 + SMa0506 0.82 -0.8 275,047 + -1.0
Or see this region's nucleotide sequence