Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0355 and SMa0357 are separated by 855 nucleotides SMa0357 and SMa0359 are separated by 8 nucleotides SMa0359 and SMa0360 overlap by 4 nucleotides
SMa0355: SMa0355 - LysR family transcriptional regulator, at 191,922 to 192,416
SMa0355
SMa0357: SMa0357 - hypothetical protein, at 193,272 to 193,553
SMa0357
SMa0359: SMa0359 - hypothetical protein, at 193,562 to 193,807
SMa0359
SMa0360: SMa0360 - transposase, at 193,804 to 194,493
SMa0360
Position (kb)
193
194 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 192.297 kb on - strand, within SMa0355 at 192.627 kb on + strand at 192.627 kb on + strand at 192.630 kb on + strand at 192.630 kb on + strand at 192.644 kb on + strand at 192.645 kb on - strand at 192.676 kb on + strand at 192.677 kb on - strand at 192.808 kb on + strand at 192.840 kb on - strand at 192.840 kb on - strand at 192.841 kb on + strand at 192.841 kb on + strand at 192.910 kb on + strand at 192.911 kb on - strand at 192.911 kb on - strand at 192.914 kb on + strand at 192.915 kb on - strand at 192.957 kb on - strand at 193.012 kb on + strand at 193.060 kb on + strand at 193.103 kb on - strand at 193.124 kb on - strand at 193.295 kb on + strand at 193.296 kb on - strand at 193.317 kb on + strand, within SMa0357 at 193.317 kb on + strand, within SMa0357 at 193.371 kb on + strand, within SMa0357 at 193.371 kb on + strand, within SMa0357 at 193.402 kb on + strand, within SMa0357 at 193.433 kb on + strand, within SMa0357 at 193.563 kb on + strand at 193.633 kb on + strand, within SMa0359 at 193.634 kb on - strand, within SMa0359 at 193.636 kb on - strand, within SMa0359 at 193.674 kb on + strand, within SMa0359 at 193.694 kb on + strand, within SMa0359 at 193.716 kb on + strand, within SMa0359 at 193.730 kb on + strand, within SMa0359 at 193.731 kb on - strand, within SMa0359 at 193.731 kb on - strand, within SMa0359 at 193.790 kb on + strand at 193.813 kb on + strand at 193.814 kb on - strand at 193.814 kb on - strand at 193.963 kb on - strand, within SMa0360 at 194.196 kb on - strand, within SMa0360 at 194.322 kb on + strand, within SMa0360 at 194.512 kb on + strand at 194.513 kb on - strand at 194.537 kb on + strand at 194.537 kb on + strand at 194.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 192,297 - SMa0355 0.76 +1.2 192,627 + -0.2 192,627 + -1.9 192,630 + +1.0 192,630 + -0.5 192,644 + +0.1 192,645 - +0.3 192,676 + -0.6 192,677 - +0.8 192,808 + -1.3 192,840 - +0.3 192,840 - +0.2 192,841 + -0.5 192,841 + -1.1 192,910 + +1.2 192,911 - +0.0 192,911 - -1.8 192,914 + -0.2 192,915 - +0.4 192,957 - +1.3 193,012 + -3.2 193,060 + +1.9 193,103 - +1.5 193,124 - -1.8 193,295 + +2.4 193,296 - -0.3 193,317 + SMa0357 0.16 +1.0 193,317 + SMa0357 0.16 -3.6 193,371 + SMa0357 0.35 -0.2 193,371 + SMa0357 0.35 -1.6 193,402 + SMa0357 0.46 +0.8 193,433 + SMa0357 0.57 +1.2 193,563 + -0.4 193,633 + SMa0359 0.29 +0.7 193,634 - SMa0359 0.29 +0.3 193,636 - SMa0359 0.30 +0.1 193,674 + SMa0359 0.46 +0.7 193,694 + SMa0359 0.54 +0.3 193,716 + SMa0359 0.63 +0.3 193,730 + SMa0359 0.68 -1.7 193,731 - SMa0359 0.69 -0.7 193,731 - SMa0359 0.69 -1.3 193,790 + -0.9 193,813 + -1.7 193,814 - +0.3 193,814 - +0.5 193,963 - SMa0360 0.23 -0.1 194,196 - SMa0360 0.57 +0.7 194,322 + SMa0360 0.75 -1.5 194,512 + +1.1 194,513 - -1.3 194,537 + -1.7 194,537 + -0.1 194,538 - +1.4
Or see this region's nucleotide sequence