Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0299 and SMa0300 overlap by 4 nucleotides SMa0300 and SMa0301 overlap by 4 nucleotides SMa0301 and SMa0302 are separated by 69 nucleotides
SMa0299: SMa0299 - ABC transporter permease, at 164,858 to 165,745
SMa0299
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
SMa0301: SMa0301 - hypothetical protein, at 166,692 to 167,360
SMa0301
SMa0302: SMa0302 - ABC transporter substrate-binding protein, at 167,430 to 168,956
SMa0302
Position (kb) 166
167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 165.736 kb on + strand at 165.813 kb on - strand at 165.813 kb on - strand at 165.902 kb on + strand, within SMa0300 at 165.903 kb on - strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.056 kb on - strand, within SMa0300 at 166.107 kb on - strand, within SMa0300 at 166.119 kb on + strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.364 kb on + strand, within SMa0300 at 166.365 kb on - strand, within SMa0300 at 166.496 kb on + strand, within SMa0300 at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.925 kb on - strand, within SMa0301 at 166.927 kb on + strand, within SMa0301 at 167.000 kb on + strand, within SMa0301 at 167.001 kb on - strand, within SMa0301 at 167.034 kb on - strand, within SMa0301 at 167.056 kb on + strand, within SMa0301 at 167.057 kb on - strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.102 kb on - strand, within SMa0301 at 167.366 kb on + strand at 167.366 kb on + strand at 167.367 kb on - strand at 167.456 kb on - strand at 167.456 kb on - strand at 167.488 kb on + strand at 167.546 kb on + strand at 167.734 kb on + strand, within SMa0302 at 167.734 kb on + strand, within SMa0302 at 167.735 kb on - strand, within SMa0302 at 167.776 kb on + strand, within SMa0302 at 167.839 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 168.123 kb on + strand, within SMa0302 at 168.124 kb on - strand, within SMa0302 at 168.133 kb on + strand, within SMa0302 at 168.134 kb on - strand, within SMa0302 at 168.263 kb on + strand, within SMa0302 at 168.303 kb on - strand, within SMa0302
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 165,736 + -2.0 165,813 - +0.5 165,813 - +1.0 165,902 + SMa0300 0.17 +0.0 165,903 - SMa0300 0.17 -0.8 166,055 + SMa0300 0.33 -0.2 166,055 + SMa0300 0.33 -1.0 166,055 + SMa0300 0.33 -0.0 166,055 + SMa0300 0.33 +0.6 166,056 - SMa0300 0.33 +1.3 166,107 - SMa0300 0.38 +0.1 166,119 + SMa0300 0.40 -0.4 166,120 - SMa0300 0.40 +0.7 166,120 - SMa0300 0.40 -0.0 166,364 + SMa0300 0.65 -2.0 166,365 - SMa0300 0.65 +1.8 166,496 + SMa0300 0.79 +0.9 166,685 - -0.8 166,685 - -0.5 166,685 - +1.2 166,685 - +0.6 166,789 + SMa0301 0.14 -0.7 166,789 + SMa0301 0.14 -0.8 166,789 + SMa0301 0.14 -1.9 166,790 - SMa0301 0.15 -0.1 166,790 - SMa0301 0.15 +0.6 166,790 - SMa0301 0.15 -1.7 166,925 - SMa0301 0.35 +3.0 166,927 + SMa0301 0.35 +1.1 167,000 + SMa0301 0.46 +0.7 167,001 - SMa0301 0.46 +0.4 167,034 - SMa0301 0.51 +2.9 167,056 + SMa0301 0.54 -1.1 167,057 - SMa0301 0.55 -1.6 167,101 + SMa0301 0.61 -0.3 167,101 + SMa0301 0.61 +0.1 167,102 - SMa0301 0.61 -0.4 167,366 + -1.7 167,366 + -0.2 167,367 - -1.6 167,456 - -0.7 167,456 - -0.9 167,488 + -3.8 167,546 + +0.5 167,734 + SMa0302 0.20 -0.2 167,734 + SMa0302 0.20 -0.8 167,735 - SMa0302 0.20 +0.1 167,776 + SMa0302 0.23 -1.2 167,839 + SMa0302 0.27 +0.0 167,884 + SMa0302 0.30 -0.0 167,884 + SMa0302 0.30 -0.2 168,123 + SMa0302 0.45 -0.2 168,124 - SMa0302 0.45 -0.4 168,133 + SMa0302 0.46 +0.5 168,134 - SMa0302 0.46 -0.5 168,263 + SMa0302 0.55 +0.2 168,303 - SMa0302 0.57 +1.6
Or see this region's nucleotide sequence