Strain Fitness in Sinorhizobium meliloti 1021 around SMa0293

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0288 and SMa0291 are separated by 274 nucleotidesSMa0291 and SMa0293 are separated by 288 nucleotidesSMa0293 and SMa0298 are separated by 372 nucleotides SMa0288: SMa0288 - hypothetical protein, at 160,505 to 161,341 SMa0288 SMa0291: SMa0291 - hypothetical protein, at 161,616 to 161,984 SMa0291 SMa0293: SMa0293 - hypothetical protein, at 162,273 to 162,668 SMa0293 SMa0298: SMa0298 - ABC transporter ATP-binding protein, at 163,041 to 164,855 SMa0298 Position (kb) 162 163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 161.362 kb on + strandat 161.363 kb on - strandat 161.543 kb on + strandat 161.571 kb on + strandat 161.571 kb on + strandat 161.615 kb on + strandat 161.616 kb on - strandat 161.643 kb on - strandat 161.691 kb on + strand, within SMa0291at 161.876 kb on - strand, within SMa0291at 161.955 kb on - strandat 161.982 kb on + strandat 161.982 kb on + strandat 161.982 kb on + strandat 161.983 kb on - strandat 161.983 kb on - strandat 162.007 kb on + strandat 162.008 kb on - strandat 162.031 kb on - strandat 162.085 kb on + strandat 162.262 kb on - strandat 162.274 kb on + strandat 162.369 kb on - strand, within SMa0293at 162.374 kb on + strand, within SMa0293at 162.421 kb on + strand, within SMa0293at 162.514 kb on - strand, within SMa0293at 162.599 kb on + strand, within SMa0293at 162.651 kb on + strandat 162.651 kb on + strandat 162.686 kb on + strandat 162.687 kb on - strandat 162.687 kb on - strandat 162.820 kb on - strandat 162.839 kb on - strandat 162.976 kb on + strandat 162.983 kb on + strandat 163.039 kb on + strandat 163.039 kb on + strandat 163.039 kb on + strandat 163.040 kb on - strandat 163.040 kb on - strandat 163.184 kb on - strandat 163.204 kb on - strandat 163.263 kb on + strand, within SMa0298at 163.263 kb on + strand, within SMa0298at 163.264 kb on - strandat 163.264 kb on - strand, within SMa0298at 163.264 kb on - strand, within SMa0298at 163.355 kb on + strand, within SMa0298at 163.356 kb on - strand, within SMa0298at 163.356 kb on - strand, within SMa0298at 163.552 kb on + strand, within SMa0298at 163.553 kb on - strand, within SMa0298

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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161,362 + +1.3
161,363 - +1.1
161,543 + +1.3
161,571 + +0.8
161,571 + -1.0
161,615 + -0.4
161,616 - +1.3
161,643 - -1.7
161,691 + SMa0291 0.20 +0.2
161,876 - SMa0291 0.70 +0.7
161,955 - +1.9
161,982 + -0.5
161,982 + +0.6
161,982 + +1.0
161,983 - +0.6
161,983 - +0.7
162,007 + +0.5
162,008 - -4.3
162,031 - +0.1
162,085 + -0.4
162,262 - -0.1
162,274 + -0.0
162,369 - SMa0293 0.24 -1.1
162,374 + SMa0293 0.26 +1.2
162,421 + SMa0293 0.37 +0.6
162,514 - SMa0293 0.61 +2.4
162,599 + SMa0293 0.82 +0.5
162,651 + -0.0
162,651 + -0.3
162,686 + +0.9
162,687 - +2.0
162,687 - -0.1
162,820 - +1.4
162,839 - +0.1
162,976 + -0.4
162,983 + +0.2
163,039 + +0.7
163,039 + -0.8
163,039 + +0.4
163,040 - -0.2
163,040 - +0.2
163,184 - +0.8
163,204 - +0.0
163,263 + SMa0298 0.12 +0.0
163,263 + SMa0298 0.12 +0.5
163,264 - -0.3
163,264 - SMa0298 0.12 +0.3
163,264 - SMa0298 0.12 -1.3
163,355 + SMa0298 0.17 -1.0
163,356 - SMa0298 0.17 -0.2
163,356 - SMa0298 0.17 +0.1
163,552 + SMa0298 0.28 +0.4
163,553 - SMa0298 0.28 +0.7

Or see this region's nucleotide sequence