Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21636 and SM_b21637 are separated by 28 nucleotides SM_b21637 and SM_b21638 are separated by 9 nucleotides SM_b21638 and SM_b21639 overlap by 1 nucleotides SM_b21639 and SM_b21640 are separated by 19 nucleotides
SM_b21636: SM_b21636 - ferredoxin reductase electron transfer protein, at 1,665,103 to 1,666,179
_b21636
SM_b21637: SM_b21637 - phenylacetic acid degradation protein, at 1,666,208 to 1,666,732
_b21637
SM_b21638: SM_b21638 - phenylacetic acid degradation protein, at 1,666,742 to 1,667,527
_b21638
SM_b21639: SM_b21639 - phenylacetate-CoA oxygenase subunit PaaB, at 1,667,527 to 1,667,811
_b21639
SM_b21640: SM_b21640 - phenylacetate-CoA oxygenase subunit PaaA, at 1,667,831 to 1,668,829
_b21640
Position (kb)
1666
1667
1668 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1665.787 kb on + strand, within SM_b21636 at 1666.011 kb on - strand, within SM_b21636 at 1666.059 kb on - strand, within SM_b21636 at 1666.166 kb on + strand at 1666.204 kb on + strand at 1666.204 kb on + strand at 1666.205 kb on - strand at 1666.225 kb on - strand at 1666.257 kb on + strand at 1666.257 kb on + strand at 1666.257 kb on + strand at 1666.258 kb on - strand at 1666.697 kb on + strand at 1666.697 kb on + strand at 1666.697 kb on + strand at 1666.697 kb on + strand at 1666.697 kb on + strand at 1666.697 kb on + strand at 1666.698 kb on - strand at 1666.698 kb on - strand at 1666.719 kb on - strand at 1666.733 kb on - strand at 1666.743 kb on + strand at 1666.743 kb on + strand at 1666.744 kb on - strand at 1666.797 kb on + strand at 1666.798 kb on - strand at 1666.798 kb on - strand at 1666.843 kb on + strand, within SM_b21638 at 1666.843 kb on + strand, within SM_b21638 at 1666.844 kb on - strand, within SM_b21638 at 1666.845 kb on + strand, within SM_b21638 at 1666.994 kb on - strand, within SM_b21638 at 1666.995 kb on + strand, within SM_b21638 at 1666.996 kb on - strand, within SM_b21638 at 1666.996 kb on - strand, within SM_b21638 at 1666.996 kb on - strand, within SM_b21638 at 1667.006 kb on - strand, within SM_b21638 at 1667.026 kb on + strand, within SM_b21638 at 1667.027 kb on - strand, within SM_b21638 at 1667.094 kb on + strand, within SM_b21638 at 1667.094 kb on + strand, within SM_b21638 at 1667.094 kb on + strand, within SM_b21638 at 1667.095 kb on - strand, within SM_b21638 at 1667.095 kb on - strand, within SM_b21638 at 1667.175 kb on + strand, within SM_b21638 at 1667.175 kb on + strand, within SM_b21638 at 1667.175 kb on + strand, within SM_b21638 at 1667.176 kb on - strand, within SM_b21638 at 1667.176 kb on - strand, within SM_b21638 at 1667.280 kb on + strand, within SM_b21638 at 1667.280 kb on + strand at 1667.280 kb on + strand, within SM_b21638 at 1667.449 kb on + strand at 1667.450 kb on - strand at 1667.450 kb on - strand at 1667.577 kb on - strand, within SM_b21639 at 1667.577 kb on - strand, within SM_b21639 at 1667.636 kb on - strand, within SM_b21639 at 1667.686 kb on - strand, within SM_b21639 at 1667.687 kb on + strand, within SM_b21639 at 1667.687 kb on + strand, within SM_b21639 at 1667.688 kb on - strand, within SM_b21639 at 1667.811 kb on + strand at 1667.812 kb on - strand at 1667.812 kb on - strand at 1667.812 kb on - strand at 1667.812 kb on - strand at 1667.950 kb on + strand, within SM_b21640 at 1667.951 kb on - strand, within SM_b21640 at 1667.951 kb on - strand, within SM_b21640 at 1668.445 kb on - strand, within SM_b21640 at 1668.463 kb on - strand, within SM_b21640 at 1668.463 kb on - strand, within SM_b21640
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,665,787 + SM_b21636 0.64 +0.7 1,666,011 - SM_b21636 0.84 +0.1 1,666,059 - SM_b21636 0.89 -0.3 1,666,166 + -4.4 1,666,204 + -1.1 1,666,204 + +0.2 1,666,205 - +1.1 1,666,225 - -0.2 1,666,257 + +2.3 1,666,257 + -0.2 1,666,257 + +0.2 1,666,258 - -1.1 1,666,697 + -0.3 1,666,697 + +0.8 1,666,697 + -1.4 1,666,697 + -1.3 1,666,697 + +3.6 1,666,697 + -0.0 1,666,698 - +1.1 1,666,698 - -2.7 1,666,719 - -0.4 1,666,733 - -1.0 1,666,743 + -0.9 1,666,743 + -0.1 1,666,744 - +0.1 1,666,797 + +0.2 1,666,798 - -0.6 1,666,798 - -0.4 1,666,843 + SM_b21638 0.13 -0.0 1,666,843 + SM_b21638 0.13 -0.5 1,666,844 - SM_b21638 0.13 -1.6 1,666,845 + SM_b21638 0.13 +0.8 1,666,994 - SM_b21638 0.32 +0.5 1,666,995 + SM_b21638 0.32 -0.2 1,666,996 - SM_b21638 0.32 +0.6 1,666,996 - SM_b21638 0.32 +4.8 1,666,996 - SM_b21638 0.32 +0.2 1,667,006 - SM_b21638 0.34 +1.7 1,667,026 + SM_b21638 0.36 -1.7 1,667,027 - SM_b21638 0.36 +0.1 1,667,094 + SM_b21638 0.45 -0.6 1,667,094 + SM_b21638 0.45 -1.3 1,667,094 + SM_b21638 0.45 +0.3 1,667,095 - SM_b21638 0.45 +0.8 1,667,095 - SM_b21638 0.45 -2.2 1,667,175 + SM_b21638 0.55 +0.3 1,667,175 + SM_b21638 0.55 +0.3 1,667,175 + SM_b21638 0.55 -0.3 1,667,176 - SM_b21638 0.55 +0.9 1,667,176 - SM_b21638 0.55 -0.1 1,667,280 + SM_b21638 0.68 -0.4 1,667,280 + +0.3 1,667,280 + SM_b21638 0.68 -1.9 1,667,449 + +1.4 1,667,450 - -0.1 1,667,450 - -0.1 1,667,577 - SM_b21639 0.18 -1.1 1,667,577 - SM_b21639 0.18 +0.4 1,667,636 - SM_b21639 0.38 +0.5 1,667,686 - SM_b21639 0.56 +0.0 1,667,687 + SM_b21639 0.56 +0.8 1,667,687 + SM_b21639 0.56 +0.6 1,667,688 - SM_b21639 0.56 -0.4 1,667,811 + +0.4 1,667,812 - +1.8 1,667,812 - +0.4 1,667,812 - +1.7 1,667,812 - -2.7 1,667,950 + SM_b21640 0.12 -1.5 1,667,951 - SM_b21640 0.12 +1.3 1,667,951 - SM_b21640 0.12 +0.8 1,668,445 - SM_b21640 0.61 -1.6 1,668,463 - SM_b21640 0.63 -0.6 1,668,463 - SM_b21640 0.63 +0.5
Or see this region's nucleotide sequence