Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21431 and SM_b21432 are separated by 2 nucleotides SM_b21432 and SM_b21433 are separated by 105 nucleotides SM_b21433 and SM_b21685 are separated by 107 nucleotides SM_b21685 and SM_b21434 are separated by 9 nucleotides
SM_b21431: SM_b21431 - hypothetical protein, at 1,361,810 to 1,362,232
_b21431
SM_b21432: SM_b21432 - iron uptake ABC transporter substrate-binding protein precursor, at 1,362,235 to 1,362,942
_b21432
SM_b21433: SM_b21433 - methyl-transferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,363,048 to 1,363,857
_b21433
SM_b21685: SM_b21685 - hypothetical protein, at 1,363,965 to 1,364,120
_b21685
SM_b21434: SM_b21434 - LysR family transcriptional regulator, at 1,364,130 to 1,365,050
_b21434
Position (kb)
1363
1364 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1362.093 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.498 kb on - strand, within SM_b21432 at 1362.535 kb on - strand, within SM_b21432 at 1362.536 kb on + strand, within SM_b21432 at 1362.537 kb on - strand at 1362.537 kb on - strand, within SM_b21432 at 1362.684 kb on - strand, within SM_b21432 at 1362.693 kb on - strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.895 kb on + strand at 1362.895 kb on + strand at 1363.003 kb on + strand at 1363.003 kb on + strand at 1363.075 kb on + strand at 1363.075 kb on + strand at 1363.102 kb on + strand at 1363.359 kb on + strand, within SM_b21433 at 1363.359 kb on + strand, within SM_b21433 at 1363.360 kb on - strand, within SM_b21433 at 1363.389 kb on + strand, within SM_b21433 at 1363.389 kb on + strand, within SM_b21433 at 1363.390 kb on - strand, within SM_b21433 at 1363.697 kb on + strand, within SM_b21433 at 1363.733 kb on + strand, within SM_b21433 at 1363.734 kb on - strand, within SM_b21433 at 1363.760 kb on + strand, within SM_b21433 at 1363.761 kb on - strand, within SM_b21433 at 1363.761 kb on - strand, within SM_b21433 at 1363.890 kb on + strand at 1363.890 kb on + strand at 1363.891 kb on - strand at 1364.042 kb on + strand, within SM_b21685 at 1364.119 kb on - strand at 1364.335 kb on - strand, within SM_b21434 at 1364.335 kb on - strand, within SM_b21434 at 1364.373 kb on - strand, within SM_b21434 at 1364.478 kb on + strand, within SM_b21434 at 1364.501 kb on - strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.676 kb on - strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.828 kb on - strand, within SM_b21434
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,362,093 + SM_b21431 0.67 +0.5 1,362,126 + SM_b21431 0.75 -0.8 1,362,126 + SM_b21431 0.75 +1.2 1,362,126 + SM_b21431 0.75 +0.3 1,362,126 + SM_b21431 0.75 +2.9 1,362,126 + SM_b21431 0.75 +1.0 1,362,126 + SM_b21431 0.75 -0.1 1,362,127 - SM_b21431 0.75 +1.3 1,362,127 - SM_b21431 0.75 +1.1 1,362,127 - SM_b21431 0.75 +2.6 1,362,151 + SM_b21431 0.81 +1.9 1,362,151 + SM_b21431 0.81 +0.7 1,362,498 - SM_b21432 0.37 -0.3 1,362,535 - SM_b21432 0.42 +1.8 1,362,536 + SM_b21432 0.43 +1.2 1,362,537 - +1.9 1,362,537 - SM_b21432 0.43 -1.1 1,362,684 - SM_b21432 0.63 +1.7 1,362,693 - SM_b21432 0.65 -1.0 1,362,779 + SM_b21432 0.77 +1.4 1,362,779 + SM_b21432 0.77 +1.4 1,362,779 + SM_b21432 0.77 +0.7 1,362,895 + +0.2 1,362,895 + +0.1 1,363,003 + +0.7 1,363,003 + -1.5 1,363,075 + +0.0 1,363,075 + -0.1 1,363,102 + -0.4 1,363,359 + SM_b21433 0.38 +0.2 1,363,359 + SM_b21433 0.38 -0.8 1,363,360 - SM_b21433 0.39 +0.6 1,363,389 + SM_b21433 0.42 -1.9 1,363,389 + SM_b21433 0.42 -0.4 1,363,390 - SM_b21433 0.42 +0.1 1,363,697 + SM_b21433 0.80 -0.4 1,363,733 + SM_b21433 0.85 +0.1 1,363,734 - SM_b21433 0.85 -1.2 1,363,760 + SM_b21433 0.88 +0.7 1,363,761 - SM_b21433 0.88 -1.1 1,363,761 - SM_b21433 0.88 -0.5 1,363,890 + +0.1 1,363,890 + +0.9 1,363,891 - +1.2 1,364,042 + SM_b21685 0.49 -1.1 1,364,119 - +1.2 1,364,335 - SM_b21434 0.22 -0.9 1,364,335 - SM_b21434 0.22 -0.5 1,364,373 - SM_b21434 0.26 -1.8 1,364,478 + SM_b21434 0.38 -0.0 1,364,501 - SM_b21434 0.40 +0.3 1,364,575 + SM_b21434 0.48 +0.6 1,364,575 + SM_b21434 0.48 +0.8 1,364,575 + SM_b21434 0.48 -0.3 1,364,575 + SM_b21434 0.48 +0.9 1,364,576 - SM_b21434 0.48 +1.6 1,364,576 - SM_b21434 0.48 -0.7 1,364,576 - SM_b21434 0.48 -1.5 1,364,576 - SM_b21434 0.48 -0.0 1,364,576 - SM_b21434 0.48 -0.7 1,364,576 - SM_b21434 0.48 -2.4 1,364,644 - SM_b21434 0.56 +3.3 1,364,644 - SM_b21434 0.56 +1.4 1,364,644 - SM_b21434 0.56 -0.4 1,364,676 - SM_b21434 0.59 +0.2 1,364,827 + SM_b21434 0.76 -0.5 1,364,827 + SM_b21434 0.76 -0.2 1,364,827 + SM_b21434 0.76 +1.0 1,364,828 - SM_b21434 0.76 -0.1
Or see this region's nucleotide sequence