Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21428 and SM_b21429 are separated by 24 nucleotides SM_b21429 and SM_b21430 overlap by 7 nucleotides SM_b21430 and SM_b21431 are separated by 126 nucleotides SM_b21431 and SM_b21432 are separated by 2 nucleotides
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619
_b21429
SM_b21430: SM_b21430 - iron ABC transporter permease, at 1,360,613 to 1,361,683
_b21430
SM_b21431: SM_b21431 - hypothetical protein, at 1,361,810 to 1,362,232
_b21431
SM_b21432: SM_b21432 - iron uptake ABC transporter substrate-binding protein precursor, at 1,362,235 to 1,362,942
_b21432
Position (kb)
1360
1361
1362 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1359.938 kb on - strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.228 kb on - strand, within SM_b21429 at 1360.358 kb on - strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.435 kb on - strand, within SM_b21429 at 1360.440 kb on + strand, within SM_b21429 at 1360.441 kb on - strand, within SM_b21429 at 1360.582 kb on + strand at 1360.583 kb on - strand at 1360.614 kb on + strand at 1360.807 kb on + strand, within SM_b21430 at 1360.807 kb on + strand, within SM_b21430 at 1360.808 kb on - strand, within SM_b21430 at 1360.816 kb on + strand, within SM_b21430 at 1360.946 kb on - strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.266 kb on - strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430 at 1361.632 kb on - strand at 1361.750 kb on - strand at 1361.758 kb on + strand at 1361.758 kb on + strand at 1361.759 kb on - strand at 1361.759 kb on - strand at 1361.839 kb on - strand at 1361.851 kb on - strand at 1361.964 kb on + strand, within SM_b21431 at 1361.976 kb on + strand, within SM_b21431 at 1361.977 kb on - strand, within SM_b21431 at 1362.093 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.498 kb on - strand, within SM_b21432 at 1362.535 kb on - strand, within SM_b21432 at 1362.536 kb on + strand, within SM_b21432 at 1362.537 kb on - strand at 1362.537 kb on - strand, within SM_b21432
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,359,938 - SM_b21429 0.10 +1.0 1,360,030 + SM_b21429 0.23 +0.7 1,360,030 + SM_b21429 0.23 +0.9 1,360,228 - SM_b21429 0.49 +1.1 1,360,358 - SM_b21429 0.66 +1.4 1,360,399 + SM_b21429 0.71 +1.5 1,360,399 + SM_b21429 0.71 +1.2 1,360,399 + SM_b21429 0.71 +1.2 1,360,400 - SM_b21429 0.71 -3.1 1,360,400 - SM_b21429 0.71 +1.5 1,360,400 - SM_b21429 0.71 +1.1 1,360,435 - SM_b21429 0.76 -1.4 1,360,440 + SM_b21429 0.76 +1.0 1,360,441 - SM_b21429 0.77 -0.1 1,360,582 + +0.3 1,360,583 - -1.7 1,360,614 + +2.1 1,360,807 + SM_b21430 0.18 +0.6 1,360,807 + SM_b21430 0.18 +0.3 1,360,808 - SM_b21430 0.18 +1.4 1,360,816 + SM_b21430 0.19 +0.6 1,360,946 - SM_b21430 0.31 -0.2 1,361,263 + SM_b21430 0.61 +1.4 1,361,263 + SM_b21430 0.61 +2.5 1,361,263 + SM_b21430 0.61 +1.3 1,361,263 + SM_b21430 0.61 -1.2 1,361,264 - SM_b21430 0.61 +1.2 1,361,264 - SM_b21430 0.61 +0.3 1,361,264 - SM_b21430 0.61 +0.4 1,361,266 - SM_b21430 0.61 +0.5 1,361,453 + SM_b21430 0.78 -2.3 1,361,453 + SM_b21430 0.78 +0.8 1,361,453 + SM_b21430 0.78 +0.8 1,361,453 + SM_b21430 0.78 -2.1 1,361,453 + SM_b21430 0.78 +0.5 1,361,454 - SM_b21430 0.79 +1.2 1,361,454 - SM_b21430 0.79 +1.2 1,361,533 - SM_b21430 0.86 -1.1 1,361,533 - SM_b21430 0.86 +1.4 1,361,632 - -1.5 1,361,750 - -0.0 1,361,758 + +0.5 1,361,758 + -2.0 1,361,759 - -0.0 1,361,759 - +0.7 1,361,839 - +0.1 1,361,851 - +1.1 1,361,964 + SM_b21431 0.36 +0.8 1,361,976 + SM_b21431 0.39 +1.0 1,361,977 - SM_b21431 0.39 +0.3 1,362,093 + SM_b21431 0.67 +0.5 1,362,126 + SM_b21431 0.75 -0.8 1,362,126 + SM_b21431 0.75 +1.2 1,362,126 + SM_b21431 0.75 +0.3 1,362,126 + SM_b21431 0.75 +2.9 1,362,126 + SM_b21431 0.75 +1.0 1,362,126 + SM_b21431 0.75 -0.1 1,362,127 - SM_b21431 0.75 +1.3 1,362,127 - SM_b21431 0.75 +1.1 1,362,127 - SM_b21431 0.75 +2.6 1,362,151 + SM_b21431 0.81 +1.9 1,362,151 + SM_b21431 0.81 +0.7 1,362,498 - SM_b21432 0.37 -0.3 1,362,535 - SM_b21432 0.42 +1.8 1,362,536 + SM_b21432 0.43 +1.2 1,362,537 - +1.9 1,362,537 - SM_b21432 0.43 -1.1
Or see this region's nucleotide sequence