Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20922 and SM_b21395 are separated by 26 nucleotides SM_b21395 and SM_b21396 are separated by 55 nucleotides SM_b21396 and SM_b21397 are separated by 265 nucleotides
SM_b20921: SM_b20921 - hypothetical protein, at 1,327,536 to 1,327,778
_b20921
SM_b20922: SM_b20922 - hypothetical protein, at 1,327,663 to 1,328,715
_b20922
SM_b21395: SM_b21395 - hypothetical protein, at 1,328,742 to 1,329,278
_b21395
SM_b21396: SM_b21396 - hypothetical protein, at 1,329,334 to 1,329,780
_b21396
SM_b21397: SM_b21397 - hypothetical protein, at 1,330,046 to 1,330,282
_b21397
Position (kb)
1328
1329
1330 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1327.900 kb on + strand, within SM_b20922 at 1327.901 kb on - strand, within SM_b20922 at 1327.901 kb on - strand, within SM_b20922 at 1328.016 kb on + strand, within SM_b20922 at 1328.016 kb on + strand, within SM_b20922 at 1328.017 kb on - strand, within SM_b20922 at 1328.211 kb on + strand, within SM_b20922 at 1328.212 kb on - strand, within SM_b20922 at 1328.438 kb on + strand, within SM_b20922 at 1328.438 kb on + strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.549 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.648 kb on + strand at 1328.774 kb on - strand at 1328.774 kb on - strand at 1328.774 kb on - strand at 1328.946 kb on - strand, within SM_b21395 at 1329.065 kb on + strand, within SM_b21395 at 1329.289 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.372 kb on - strand at 1329.524 kb on + strand, within SM_b21396 at 1329.524 kb on + strand, within SM_b21396 at 1329.525 kb on - strand, within SM_b21396 at 1329.543 kb on + strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.631 kb on + strand, within SM_b21396 at 1329.632 kb on - strand, within SM_b21396 at 1329.632 kb on - strand, within SM_b21396 at 1329.703 kb on + strand, within SM_b21396 at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1330.047 kb on + strand at 1330.048 kb on - strand at 1330.197 kb on + strand, within SM_b21397 at 1330.224 kb on + strand, within SM_b21397 at 1330.224 kb on + strand, within SM_b21397
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,327,900 + SM_b20922 0.23 +2.2 1,327,901 - SM_b20922 0.23 +2.2 1,327,901 - SM_b20922 0.23 -0.7 1,328,016 + SM_b20922 0.34 -1.0 1,328,016 + SM_b20922 0.34 +0.7 1,328,017 - SM_b20922 0.34 +0.1 1,328,211 + SM_b20922 0.52 -0.8 1,328,212 - SM_b20922 0.52 -0.9 1,328,438 + SM_b20922 0.74 -0.2 1,328,438 + SM_b20922 0.74 -2.1 1,328,439 - SM_b20922 0.74 -1.2 1,328,439 - SM_b20922 0.74 -0.2 1,328,549 + SM_b20922 0.84 +0.5 1,328,597 + SM_b20922 0.89 -1.3 1,328,597 + SM_b20922 0.89 +0.7 1,328,597 + SM_b20922 0.89 -1.2 1,328,648 + +0.4 1,328,774 - -0.9 1,328,774 - -0.3 1,328,774 - -0.1 1,328,946 - SM_b21395 0.38 -0.6 1,329,065 + SM_b21395 0.60 -1.7 1,329,289 + +0.2 1,329,371 + -1.3 1,329,371 + -0.0 1,329,371 + +1.0 1,329,371 + -2.5 1,329,372 - -1.6 1,329,524 + SM_b21396 0.43 +0.7 1,329,524 + SM_b21396 0.43 -0.6 1,329,525 - SM_b21396 0.43 +1.3 1,329,543 + SM_b21396 0.47 -0.0 1,329,544 - SM_b21396 0.47 -0.1 1,329,544 - SM_b21396 0.47 -0.7 1,329,544 - SM_b21396 0.47 -0.6 1,329,631 + SM_b21396 0.66 +2.3 1,329,632 - SM_b21396 0.67 +0.3 1,329,632 - SM_b21396 0.67 -0.4 1,329,703 + SM_b21396 0.83 -2.8 1,329,960 + -0.3 1,329,960 + +1.0 1,329,960 + +0.5 1,329,960 + -0.4 1,329,960 + +0.2 1,329,961 - +0.1 1,329,961 - -0.3 1,329,961 - +0.2 1,329,961 - -2.0 1,330,047 + +0.7 1,330,048 - -0.8 1,330,197 + SM_b21397 0.64 -0.2 1,330,224 + SM_b21397 0.75 +3.3 1,330,224 + SM_b21397 0.75 -0.1
Or see this region's nucleotide sequence