Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21231 and SM_b21232 are separated by 256 nucleotides SM_b21232 and SM_b21233 are separated by 2 nucleotides SM_b21233 and SM_b21234 overlap by 4 nucleotides
SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808
_b21231
SM_b21232: SM_b21232 - nucleotide sugar epimerase dehydratase, at 797,065 to 799,167
_b21232
SM_b21233: SM_b21233 - transposase of insertion sequence ISRm1 orfB protein, at 799,170 to 800,000
_b21233
SM_b21234: SM_b21234 - transposase of insertion sequence ISRm1 orfA protein, at 799,997 to 800,389
_b21234
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.141 kb on + strand, within SM_b21231 at 796.142 kb on - strand, within SM_b21231 at 796.321 kb on + strand, within SM_b21231 at 796.322 kb on - strand, within SM_b21231 at 796.361 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.516 kb on + strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.689 kb on + strand, within SM_b21231 at 796.920 kb on + strand at 796.920 kb on + strand at 796.920 kb on + strand at 796.921 kb on - strand at 796.956 kb on - strand at 797.055 kb on + strand at 797.055 kb on + strand at 797.546 kb on + strand, within SM_b21232 at 797.607 kb on + strand, within SM_b21232 at 797.608 kb on - strand, within SM_b21232 at 797.765 kb on + strand, within SM_b21232 at 797.765 kb on + strand, within SM_b21232 at 797.766 kb on - strand, within SM_b21232 at 797.766 kb on - strand, within SM_b21232 at 798.032 kb on + strand, within SM_b21232 at 798.086 kb on + strand, within SM_b21232 at 798.095 kb on + strand, within SM_b21232 at 798.095 kb on + strand, within SM_b21232 at 798.096 kb on - strand, within SM_b21232 at 798.096 kb on - strand, within SM_b21232 at 798.564 kb on + strand, within SM_b21232 at 798.566 kb on + strand, within SM_b21232 at 798.566 kb on + strand, within SM_b21232 at 798.602 kb on + strand, within SM_b21232 at 798.602 kb on + strand, within SM_b21232 at 798.603 kb on - strand, within SM_b21232 at 798.603 kb on - strand, within SM_b21232 at 798.890 kb on + strand, within SM_b21232 at 798.909 kb on - strand, within SM_b21232 at 798.940 kb on + strand, within SM_b21232 at 798.940 kb on + strand, within SM_b21232 at 798.941 kb on - strand, within SM_b21232 at 798.950 kb on + strand, within SM_b21232 at 799.016 kb on + strand at 799.021 kb on + strand at 799.022 kb on - strand at 799.073 kb on + strand at 799.073 kb on + strand at 799.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 796,141 + SM_b21231 0.42 +0.6 796,142 - SM_b21231 0.42 +1.2 796,321 + SM_b21231 0.58 -2.6 796,322 - SM_b21231 0.58 -0.4 796,361 - SM_b21231 0.61 -3.3 796,379 - SM_b21231 0.63 +0.3 796,379 - SM_b21231 0.63 +2.1 796,426 - SM_b21231 0.67 -0.9 796,426 - SM_b21231 0.67 -0.5 796,428 - SM_b21231 0.67 +0.1 796,428 - SM_b21231 0.67 +0.8 796,495 + SM_b21231 0.73 +1.1 796,495 + SM_b21231 0.73 -0.9 796,495 + SM_b21231 0.73 -1.2 796,495 + SM_b21231 0.73 -2.8 796,496 - SM_b21231 0.73 -1.9 796,496 - SM_b21231 0.73 +0.2 796,496 - SM_b21231 0.73 -0.3 796,496 - SM_b21231 0.73 -1.5 796,514 + SM_b21231 0.74 -3.3 796,514 + SM_b21231 0.74 -1.0 796,516 + SM_b21231 0.75 -0.4 796,517 - SM_b21231 0.75 -2.6 796,517 - SM_b21231 0.75 -0.6 796,517 - SM_b21231 0.75 +0.3 796,689 + SM_b21231 0.90 +0.0 796,920 + -0.3 796,920 + -0.3 796,920 + +0.1 796,921 - -0.8 796,956 - -2.6 797,055 + -2.0 797,055 + +1.1 797,546 + SM_b21232 0.23 -0.0 797,607 + SM_b21232 0.26 +0.2 797,608 - SM_b21232 0.26 +0.1 797,765 + SM_b21232 0.33 -0.4 797,765 + SM_b21232 0.33 -0.3 797,766 - SM_b21232 0.33 +0.4 797,766 - SM_b21232 0.33 +0.2 798,032 + SM_b21232 0.46 -2.2 798,086 + SM_b21232 0.49 -1.8 798,095 + SM_b21232 0.49 +0.1 798,095 + SM_b21232 0.49 -1.5 798,096 - SM_b21232 0.49 +0.0 798,096 - SM_b21232 0.49 +0.1 798,564 + SM_b21232 0.71 +0.7 798,566 + SM_b21232 0.71 -1.8 798,566 + SM_b21232 0.71 -1.2 798,602 + SM_b21232 0.73 -2.2 798,602 + SM_b21232 0.73 -0.0 798,603 - SM_b21232 0.73 -0.5 798,603 - SM_b21232 0.73 -0.2 798,890 + SM_b21232 0.87 -0.5 798,909 - SM_b21232 0.88 -1.3 798,940 + SM_b21232 0.89 -2.4 798,940 + SM_b21232 0.89 +0.2 798,941 - SM_b21232 0.89 +0.2 798,950 + SM_b21232 0.90 +0.4 799,016 + +0.9 799,021 + -2.1 799,022 - +2.3 799,073 + -1.5 799,073 + -0.2 799,114 + +0.4
Or see this region's nucleotide sequence