Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21211 and SM_b21212 are separated by 111 nucleotides SM_b21212 and SM_b21667 are separated by 70 nucleotides SM_b21667 and SM_b21213 overlap by 8 nucleotides
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
SM_b21212: SM_b21212 - hypothetical protein, at 965,894 to 966,274
_b21212
SM_b21667: SM_b21667 - hypothetical protein, at 966,345 to 966,524
_b21667
SM_b21213: SM_b21213 - serinethreonine protein phosphatase, at 966,517 to 967,176
_b21213
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 964.932 kb on - strand, within SM_b21211 at 964.933 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.204 kb on + strand, within SM_b21211 at 965.205 kb on - strand, within SM_b21211 at 965.207 kb on + strand, within SM_b21211 at 965.208 kb on - strand, within SM_b21211 at 965.305 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.318 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.396 kb on - strand, within SM_b21211 at 965.396 kb on - strand, within SM_b21211 at 965.435 kb on + strand, within SM_b21211 at 965.630 kb on + strand at 965.630 kb on + strand at 965.631 kb on - strand at 965.631 kb on - strand at 965.791 kb on + strand at 965.836 kb on - strand at 965.876 kb on - strand at 966.014 kb on - strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.272 kb on + strand at 966.364 kb on - strand, within SM_b21667 at 966.372 kb on + strand, within SM_b21667 at 966.421 kb on + strand, within SM_b21667 at 966.422 kb on - strand, within SM_b21667 at 966.464 kb on + strand at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 967.026 kb on + strand, within SM_b21213 at 967.169 kb on - strand at 967.169 kb on - strand at 967.174 kb on + strand at 967.175 kb on - strand at 967.175 kb on - strand at 967.194 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 964,932 - SM_b21211 0.52 +0.7 964,933 + SM_b21211 0.52 +0.8 965,184 + SM_b21211 0.66 +0.6 965,184 + SM_b21211 0.66 -0.3 965,184 + SM_b21211 0.66 -1.4 965,184 + SM_b21211 0.66 -0.3 965,204 + SM_b21211 0.67 -0.3 965,205 - SM_b21211 0.67 -0.4 965,207 + SM_b21211 0.67 +0.1 965,208 - SM_b21211 0.67 +1.5 965,305 + SM_b21211 0.73 +0.9 965,308 + SM_b21211 0.73 -2.4 965,308 + SM_b21211 0.73 -1.1 965,308 + SM_b21211 0.73 -2.4 965,309 - SM_b21211 0.73 +0.9 965,309 - SM_b21211 0.73 +0.1 965,309 - SM_b21211 0.73 +1.0 965,309 - SM_b21211 0.73 +0.1 965,309 - SM_b21211 0.73 -0.1 965,318 + SM_b21211 0.74 +1.1 965,393 + SM_b21211 0.78 -0.4 965,393 + SM_b21211 0.78 +0.9 965,393 + SM_b21211 0.78 +1.1 965,393 + SM_b21211 0.78 +0.2 965,393 + SM_b21211 0.78 -1.0 965,393 + SM_b21211 0.78 -0.1 965,393 + SM_b21211 0.78 -0.4 965,393 + SM_b21211 0.78 -1.7 965,393 + SM_b21211 0.78 -0.2 965,394 - SM_b21211 0.78 -0.4 965,394 - SM_b21211 0.78 -0.7 965,394 - SM_b21211 0.78 -0.2 965,394 - SM_b21211 0.78 -1.2 965,394 - SM_b21211 0.78 +0.3 965,394 - SM_b21211 0.78 +1.4 965,396 - SM_b21211 0.78 +3.2 965,396 - SM_b21211 0.78 +1.7 965,435 + SM_b21211 0.80 -2.9 965,630 + +0.5 965,630 + +0.4 965,631 - +1.1 965,631 - -0.3 965,791 + -0.2 965,836 - -0.2 965,876 - +0.3 966,014 - SM_b21212 0.31 -3.2 966,205 + SM_b21212 0.82 -0.6 966,205 + SM_b21212 0.82 -1.1 966,206 - SM_b21212 0.82 -0.1 966,206 - SM_b21212 0.82 -3.6 966,272 + -2.2 966,364 - SM_b21667 0.11 -2.0 966,372 + SM_b21667 0.15 +1.7 966,421 + SM_b21667 0.42 -0.2 966,422 - SM_b21667 0.43 -1.2 966,464 + +0.1 966,998 - SM_b21213 0.73 -3.1 966,998 - SM_b21213 0.73 +0.1 966,998 - SM_b21213 0.73 -0.2 966,998 - SM_b21213 0.73 -1.6 966,998 - SM_b21213 0.73 -0.9 967,026 + SM_b21213 0.77 -1.2 967,169 - -0.0 967,169 - +0.8 967,174 + +0.9 967,175 - -0.3 967,175 - +1.7 967,194 + +1.9 967,194 + +0.3 967,195 - -1.3 967,195 - -0.8
Or see this region's nucleotide sequence