Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21191

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21190 and SM_b21191 are separated by 9 nucleotidesSM_b21191 and SM_b21192 are separated by 225 nucleotides SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301 _b21190 SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104 _b21191 SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373 _b21192 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1at 940.590 kb on + strand, within SM_b21190at 940.590 kb on + strand, within SM_b21190at 940.591 kb on - strand, within SM_b21190at 940.660 kb on + strand, within SM_b21190at 940.661 kb on - strand, within SM_b21190at 940.661 kb on - strand, within SM_b21190at 940.661 kb on - strand, within SM_b21190at 940.661 kb on - strand, within SM_b21190at 940.917 kb on + strand, within SM_b21190at 940.917 kb on + strand, within SM_b21190at 940.925 kb on - strand, within SM_b21190at 940.963 kb on + strand, within SM_b21190at 940.963 kb on + strand, within SM_b21190at 941.039 kb on - strand, within SM_b21190at 941.202 kb on + strandat 941.203 kb on - strandat 941.520 kb on - strand, within SM_b21191at 941.636 kb on - strand, within SM_b21191at 941.636 kb on - strand, within SM_b21191at 941.685 kb on - strand, within SM_b21191at 941.793 kb on + strand, within SM_b21191at 942.217 kb on + strand, within SM_b21191at 942.217 kb on + strand, within SM_b21191at 942.234 kb on + strand, within SM_b21191at 942.670 kb on + strand, within SM_b21191at 942.671 kb on - strand, within SM_b21191at 942.758 kb on - strand, within SM_b21191at 943.069 kb on + strandat 943.497 kb on + strand, within SM_b21192at 943.548 kb on + strand, within SM_b21192at 943.632 kb on - strand, within SM_b21192at 943.772 kb on + strand, within SM_b21192at 943.773 kb on - strand, within SM_b21192at 943.773 kb on - strand, within SM_b21192at 944.013 kb on + strand, within SM_b21192at 944.013 kb on + strand, within SM_b21192at 944.014 kb on - strand, within SM_b21192at 944.015 kb on + strand, within SM_b21192at 944.015 kb on + strand, within SM_b21192at 944.015 kb on + strand, within SM_b21192at 944.015 kb on + strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192at 944.016 kb on - strand, within SM_b21192

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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940,590 + SM_b21190 0.31 +0.3
940,590 + SM_b21190 0.31 -1.2
940,591 - SM_b21190 0.32 +1.1
940,660 + SM_b21190 0.38 -0.4
940,661 - SM_b21190 0.38 +0.5
940,661 - SM_b21190 0.38 +0.2
940,661 - SM_b21190 0.38 -1.4
940,661 - SM_b21190 0.38 -1.0
940,917 + SM_b21190 0.63 +0.4
940,917 + SM_b21190 0.63 -0.3
940,925 - SM_b21190 0.64 +0.8
940,963 + SM_b21190 0.67 +0.4
940,963 + SM_b21190 0.67 +0.3
941,039 - SM_b21190 0.75 -0.1
941,202 + +0.5
941,203 - -0.8
941,520 - SM_b21191 0.12 +0.0
941,636 - SM_b21191 0.18 -2.3
941,636 - SM_b21191 0.18 +0.2
941,685 - SM_b21191 0.21 -2.4
941,793 + SM_b21191 0.27 +0.8
942,217 + SM_b21191 0.51 -0.3
942,217 + SM_b21191 0.51 +0.1
942,234 + SM_b21191 0.51 +0.3
942,670 + SM_b21191 0.76 +1.7
942,671 - SM_b21191 0.76 -2.5
942,758 - SM_b21191 0.81 -1.3
943,069 + +0.2
943,497 + SM_b21192 0.16 +1.6
943,548 + SM_b21192 0.21 +0.8
943,632 - SM_b21192 0.29 +0.7
943,772 + SM_b21192 0.42 +1.7
943,773 - SM_b21192 0.42 +0.7
943,773 - SM_b21192 0.42 +0.3
944,013 + SM_b21192 0.65 -0.3
944,013 + SM_b21192 0.65 +1.1
944,014 - SM_b21192 0.66 -0.0
944,015 + SM_b21192 0.66 +0.8
944,015 + SM_b21192 0.66 +1.3
944,015 + SM_b21192 0.66 -0.9
944,015 + SM_b21192 0.66 -0.1
944,016 - SM_b21192 0.66 +1.7
944,016 - SM_b21192 0.66 -2.9
944,016 - SM_b21192 0.66 +0.9
944,016 - SM_b21192 0.66 +0.8
944,016 - SM_b21192 0.66 +0.3
944,016 - SM_b21192 0.66 +0.4

Or see this region's nucleotide sequence