Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21154

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21152 and SM_b21153 are separated by 2 nucleotidesSM_b21153 and SM_b21154 are separated by 150 nucleotidesSM_b21154 and SM_b21155 are separated by 80 nucleotides SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006 _b21152 SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509 _b21153 SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043 _b21154 SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617 _b21155 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.706 kb on - strand, within SM_b21152at 897.777 kb on + strand, within SM_b21152at 897.809 kb on + strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 898.004 kb on + strandat 898.005 kb on - strandat 898.270 kb on + strand, within SM_b21153at 898.271 kb on - strand, within SM_b21153at 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.116 kb on + strandat 899.117 kb on - strandat 899.239 kb on + strandat 899.240 kb on - strandat 899.687 kb on + strand, within SM_b21155at 899.697 kb on - strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.777 kb on - strand, within SM_b21155at 900.006 kb on + strand, within SM_b21155

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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897,706 - SM_b21152 0.73 -0.8
897,777 + SM_b21152 0.80 -2.5
897,809 + SM_b21152 0.83 -0.8
897,810 - SM_b21152 0.83 +1.0
897,810 - SM_b21152 0.83 -0.5
897,839 + SM_b21152 0.85 +0.2
897,839 + SM_b21152 0.85 +0.2
897,840 - SM_b21152 0.85 -0.0
897,840 - SM_b21152 0.85 +0.2
898,004 + -0.1
898,005 - -0.5
898,270 + SM_b21153 0.52 -1.6
898,271 - SM_b21153 0.52 +0.2
898,687 + -0.5
898,687 + -0.2
898,687 + -0.7
898,687 + +0.4
898,687 + -2.2
898,688 - +1.4
898,688 - -1.5
898,688 - -1.0
898,688 - -0.6
898,688 - -0.5
898,688 - -0.3
899,015 + +0.9
899,015 + +0.8
899,015 + +0.2
899,116 + -1.7
899,117 - -1.0
899,239 + -0.1
899,240 - -0.7
899,687 + SM_b21155 0.38 +0.7
899,697 - SM_b21155 0.38 -0.3
899,776 + SM_b21155 0.44 -1.7
899,776 + SM_b21155 0.44 -0.9
899,776 + SM_b21155 0.44 +0.5
899,777 - SM_b21155 0.44 +1.1
900,006 + SM_b21155 0.59 -1.7

Or see this region's nucleotide sequence