Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21304 and SM_b21143 are separated by 195 nucleotides SM_b21143 and SM_b21144 are separated by 190 nucleotides
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
SM_b21143: SM_b21143 - mercuric reductase, at 886,947 to 888,368
_b21143
SM_b21144: SM_b21144 - choline uptake ABC transporter substrate-binding protein precursor, at 888,559 to 889,476
_b21144
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 886.056 kb on + strand, within SM_b21304 at 886.057 kb on - strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.087 kb on - strand, within SM_b21304 at 886.690 kb on + strand at 886.691 kb on - strand at 886.691 kb on - strand at 886.949 kb on - strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.281 kb on + strand, within SM_b21143 at 887.281 kb on + strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.291 kb on - strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.456 kb on + strand, within SM_b21143 at 887.457 kb on - strand, within SM_b21143 at 887.458 kb on + strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.510 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.593 kb on - strand, within SM_b21143 at 887.784 kb on - strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.786 kb on - strand, within SM_b21143 at 887.855 kb on - strand, within SM_b21143 at 888.149 kb on - strand, within SM_b21143 at 888.370 kb on - strand at 888.484 kb on + strand at 888.484 kb on + strand at 888.484 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.794 kb on - strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.805 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.895 kb on + strand, within SM_b21144 at 888.896 kb on - strand, within SM_b21144 at 888.940 kb on - strand, within SM_b21144 at 889.213 kb on + strand, within SM_b21144 at 889.285 kb on + strand, within SM_b21144 at 889.286 kb on - strand, within SM_b21144
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 886,056 + SM_b21304 0.12 +0.1 886,057 - SM_b21304 0.13 -0.6 886,086 + SM_b21304 0.16 -0.8 886,086 + SM_b21304 0.16 +0.1 886,087 - SM_b21304 0.16 -0.5 886,690 + -0.9 886,691 - +0.1 886,691 - +0.2 886,949 - +3.1 887,047 + -0.0 887,047 + +0.8 887,047 + -2.0 887,047 + +0.1 887,047 + +0.2 887,047 + -0.4 887,048 - -0.0 887,048 - -2.2 887,048 - -1.6 887,281 + SM_b21143 0.23 -0.1 887,281 + SM_b21143 0.23 -1.2 887,282 - SM_b21143 0.24 -0.9 887,282 - SM_b21143 0.24 -0.4 887,282 - SM_b21143 0.24 -2.2 887,291 - SM_b21143 0.24 -0.1 887,365 + SM_b21143 0.29 -0.4 887,365 + SM_b21143 0.29 -0.5 887,366 - SM_b21143 0.29 +0.1 887,366 - SM_b21143 0.29 -1.1 887,456 + SM_b21143 0.36 -0.7 887,457 - SM_b21143 0.36 -0.5 887,458 + SM_b21143 0.36 +0.7 887,459 - SM_b21143 0.36 -1.6 887,459 - SM_b21143 0.36 -1.8 887,510 + SM_b21143 0.40 +1.1 887,592 + SM_b21143 0.45 -2.0 887,592 + SM_b21143 0.45 -0.2 887,593 - SM_b21143 0.45 -1.4 887,784 - SM_b21143 0.59 -1.6 887,785 + SM_b21143 0.59 +1.0 887,785 + SM_b21143 0.59 -1.8 887,785 + SM_b21143 0.59 +0.7 887,786 - SM_b21143 0.59 -2.0 887,855 - SM_b21143 0.64 +2.0 888,149 - SM_b21143 0.85 -0.0 888,370 - +0.4 888,484 + -1.5 888,484 + -2.2 888,484 + +0.5 888,486 + +1.0 888,486 + -1.9 888,486 + -2.2 888,486 + -0.2 888,486 + -0.5 888,486 + +1.1 888,486 + +0.5 888,487 - -1.5 888,487 - -0.2 888,487 - -0.3 888,487 - +0.1 888,487 - +1.0 888,487 - -1.2 888,487 - -0.3 888,487 - -0.5 888,487 - +0.3 888,487 - +0.8 888,487 - -1.7 888,487 - -1.1 888,794 - SM_b21144 0.26 +1.1 888,802 + SM_b21144 0.26 -0.2 888,802 + SM_b21144 0.26 -0.6 888,802 + SM_b21144 0.26 -0.4 888,804 + SM_b21144 0.27 +2.1 888,804 + SM_b21144 0.27 -0.5 888,805 - SM_b21144 0.27 -0.2 888,872 - SM_b21144 0.34 -0.1 888,872 - SM_b21144 0.34 +0.1 888,872 - SM_b21144 0.34 -2.0 888,895 + SM_b21144 0.37 -4.0 888,896 - SM_b21144 0.37 -0.9 888,940 - SM_b21144 0.42 -0.9 889,213 + SM_b21144 0.71 -0.8 889,285 + SM_b21144 0.79 -1.1 889,286 - SM_b21144 0.79 +1.5
Or see this region's nucleotide sequence