Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides
SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism <small>(from data)</small>, at 751,761 to 752,222
_b21110
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 752.008 kb on - strand, within SM_b21110 at 752.008 kb on - strand, within SM_b21110 at 752.054 kb on + strand, within SM_b21110 at 752.055 kb on - strand, within SM_b21110 at 752.213 kb on + strand at 752.213 kb on + strand at 752.214 kb on - strand at 752.254 kb on - strand at 752.274 kb on + strand at 752.274 kb on + strand at 752.275 kb on - strand at 752.275 kb on - strand at 752.714 kb on + strand, within SM_b21111 at 752.714 kb on + strand, within SM_b21111 at 752.715 kb on - strand at 752.718 kb on + strand, within SM_b21111 at 752.718 kb on + strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.889 kb on - strand at 752.889 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.925 kb on - strand at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand at 754.039 kb on - strand at 754.050 kb on + strand at 754.050 kb on + strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.108 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.289 kb on - strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.396 kb on - strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.504 kb on - strand, within SM_b21113 at 754.671 kb on + strand, within SM_b21113 at 754.672 kb on - strand, within SM_b21113
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 752,008 - SM_b21110 0.53 +0.5 752,008 - SM_b21110 0.53 -0.4 752,054 + SM_b21110 0.63 -0.2 752,055 - SM_b21110 0.64 +0.2 752,213 + -1.2 752,213 + -2.5 752,214 - +0.1 752,254 - -0.2 752,274 + +1.1 752,274 + +1.2 752,275 - +0.2 752,275 - -0.2 752,714 + SM_b21111 0.67 +0.9 752,714 + SM_b21111 0.67 +0.1 752,715 - +0.5 752,718 + SM_b21111 0.68 -2.9 752,718 + SM_b21111 0.68 +1.4 752,805 - SM_b21111 0.80 -0.8 752,805 - SM_b21111 0.80 +1.7 752,889 - -1.6 752,889 - +0.4 752,907 - +1.0 752,907 - +2.1 752,925 - -2.5 752,992 - -0.1 753,064 + SM_b21112 0.10 -1.2 753,213 + SM_b21112 0.28 -0.2 753,213 + SM_b21112 0.28 +0.7 753,384 + SM_b21112 0.48 -0.2 753,385 - SM_b21112 0.48 -1.6 753,423 + SM_b21112 0.53 -1.2 753,423 + SM_b21112 0.53 -2.3 753,628 - SM_b21112 0.77 -2.5 753,651 + SM_b21112 0.80 -1.9 753,651 + SM_b21112 0.80 +0.2 753,687 - SM_b21112 0.84 -1.1 753,776 - +1.0 753,824 + -2.5 753,824 + -0.3 753,825 - -0.4 753,932 + -2.2 753,932 + -1.2 753,933 - -0.7 753,933 - -0.3 754,039 - +1.4 754,050 + -0.1 754,050 + +0.5 754,051 - +0.2 754,051 - -2.1 754,051 - -0.2 754,108 + SM_b21113 0.13 -1.4 754,126 + SM_b21113 0.14 -0.8 754,126 + SM_b21113 0.14 -1.2 754,126 + SM_b21113 0.14 +2.7 754,126 + SM_b21113 0.14 -1.4 754,127 - SM_b21113 0.14 -0.5 754,127 - SM_b21113 0.14 -0.8 754,127 - SM_b21113 0.14 -0.0 754,127 - SM_b21113 0.14 -0.5 754,127 - SM_b21113 0.14 -0.5 754,289 - SM_b21113 0.27 +0.5 754,395 + SM_b21113 0.35 +0.2 754,395 + SM_b21113 0.35 -0.8 754,396 - SM_b21113 0.35 -1.9 754,503 + SM_b21113 0.44 -0.7 754,503 + SM_b21113 0.44 -1.2 754,503 + SM_b21113 0.44 +0.6 754,504 - SM_b21113 0.44 +0.8 754,671 + SM_b21113 0.57 +1.9 754,672 - SM_b21113 0.57 +0.7
Or see this region's nucleotide sequence