Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21056

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21054 and SM_b21055 are separated by 232 nucleotidesSM_b21055 and SM_b21056 are separated by 134 nucleotidesSM_b21056 and SM_b21057 overlap by 35 nucleotidesSM_b21057 and SM_b21058 are separated by 52 nucleotides SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522 _b21054 SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339 _b21055 SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801 _b21056 SM_b21057: SM_b21057 - hypothetical protein, at 691,767 to 692,645 _b21057 SM_b21058: SM_b21058 - glucose-1-phosphate cytidylyltransferase, at 692,698 to 692,919 _b21058 Position (kb) 689 690 691 692Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 688.518 kb on + strandat 688.518 kb on + strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.545 kb on - strandat 688.565 kb on + strandat 688.566 kb on - strandat 688.566 kb on - strandat 688.613 kb on + strandat 688.614 kb on - strandat 688.641 kb on - strandat 688.641 kb on - strandat 688.680 kb on + strandat 688.718 kb on + strandat 689.059 kb on + strand, within SM_b21055at 689.059 kb on + strand, within SM_b21055at 689.188 kb on + strand, within SM_b21055at 689.188 kb on + strand, within SM_b21055at 689.189 kb on - strand, within SM_b21055at 689.193 kb on - strand, within SM_b21055at 689.369 kb on + strandat 689.410 kb on - strandat 689.427 kb on + strandat 689.468 kb on + strandat 689.469 kb on - strandat 689.469 kb on - strandat 689.469 kb on - strandat 689.475 kb on + strandat 689.530 kb on + strandat 689.530 kb on + strandat 689.726 kb on + strand, within SM_b21056at 689.727 kb on - strand, within SM_b21056at 689.752 kb on + strand, within SM_b21056at 689.752 kb on + strand, within SM_b21056at 689.753 kb on - strand, within SM_b21056at 689.753 kb on - strand, within SM_b21056at 690.057 kb on - strand, within SM_b21056at 690.057 kb on - strand, within SM_b21056at 690.086 kb on + strand, within SM_b21056at 690.087 kb on - strand, within SM_b21056at 690.087 kb on - strand, within SM_b21056at 690.227 kb on + strand, within SM_b21056at 690.227 kb on + strand, within SM_b21056at 690.228 kb on - strand, within SM_b21056at 690.573 kb on + strand, within SM_b21056at 690.574 kb on - strand, within SM_b21056at 690.583 kb on + strand, within SM_b21056at 690.666 kb on + strand, within SM_b21056at 690.666 kb on + strand, within SM_b21056at 690.666 kb on + strand, within SM_b21056at 690.666 kb on + strand, within SM_b21056at 690.666 kb on + strand, within SM_b21056at 690.667 kb on - strand, within SM_b21056at 690.667 kb on - strand, within SM_b21056at 690.667 kb on - strand, within SM_b21056at 690.667 kb on - strand, within SM_b21056at 690.670 kb on + strand, within SM_b21056at 690.731 kb on + strand, within SM_b21056at 690.772 kb on + strand, within SM_b21056at 690.773 kb on - strand, within SM_b21056at 690.774 kb on + strand, within SM_b21056at 690.775 kb on - strand, within SM_b21056at 690.958 kb on + strand, within SM_b21056at 691.109 kb on + strand, within SM_b21056at 691.109 kb on + strand, within SM_b21056at 691.118 kb on + strand, within SM_b21056at 691.119 kb on - strand, within SM_b21056at 691.178 kb on + strand, within SM_b21056at 691.178 kb on + strand, within SM_b21056at 691.183 kb on + strand, within SM_b21056at 691.184 kb on - strand, within SM_b21056at 691.242 kb on - strand, within SM_b21056at 691.242 kb on - strand, within SM_b21056at 691.242 kb on - strand, within SM_b21056at 691.272 kb on - strand, within SM_b21056at 691.303 kb on + strand, within SM_b21056at 691.304 kb on - strand, within SM_b21056at 691.304 kb on - strand, within SM_b21056at 691.403 kb on + strand, within SM_b21056at 691.403 kb on + strand, within SM_b21056at 691.403 kb on + strand, within SM_b21056at 691.403 kb on + strand, within SM_b21056at 691.404 kb on - strand, within SM_b21056at 691.660 kb on + strandat 691.660 kb on + strandat 691.661 kb on - strandat 691.676 kb on + strandat 691.676 kb on + strandat 691.734 kb on - strandat 691.760 kb on + strandat 691.761 kb on - strandat 692.068 kb on + strand, within SM_b21057at 692.068 kb on + strand, within SM_b21057at 692.068 kb on + strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.147 kb on + strand, within SM_b21057at 692.147 kb on + strand, within SM_b21057at 692.228 kb on + strand, within SM_b21057at 692.236 kb on + strand, within SM_b21057at 692.274 kb on + strand, within SM_b21057at 692.275 kb on - strand, within SM_b21057at 692.275 kb on - strand, within SM_b21057at 692.531 kb on + strand, within SM_b21057at 692.531 kb on + strand, within SM_b21057at 692.532 kb on - strand, within SM_b21057at 692.648 kb on + strandat 692.648 kb on + strandat 692.710 kb on - strandat 692.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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688,518 + +0.7
688,518 + -0.7
688,519 - -0.3
688,519 - -0.3
688,519 - +0.5
688,519 - -0.6
688,545 - +0.5
688,565 + +0.6
688,566 - +0.2
688,566 - -1.7
688,613 + -2.2
688,614 - +2.1
688,641 - +1.8
688,641 - -1.7
688,680 + +0.1
688,718 + +0.5
689,059 + SM_b21055 0.52 -3.2
689,059 + SM_b21055 0.52 -0.5
689,188 + SM_b21055 0.74 +0.1
689,188 + SM_b21055 0.74 +0.4
689,189 - SM_b21055 0.74 +0.9
689,193 - SM_b21055 0.75 +0.1
689,369 + -0.4
689,410 - -0.3
689,427 + +0.2
689,468 + +0.3
689,469 - -1.9
689,469 - +0.9
689,469 - +0.1
689,475 + +0.3
689,530 + -2.4
689,530 + +0.3
689,726 + SM_b21056 0.11 +0.0
689,727 - SM_b21056 0.11 +0.2
689,752 + SM_b21056 0.12 +3.9
689,752 + SM_b21056 0.12 -0.4
689,753 - SM_b21056 0.12 -1.1
689,753 - SM_b21056 0.12 +0.2
690,057 - SM_b21056 0.25 +0.7
690,057 - SM_b21056 0.25 -0.7
690,086 + SM_b21056 0.26 +0.8
690,087 - SM_b21056 0.26 +0.7
690,087 - SM_b21056 0.26 -1.2
690,227 + SM_b21056 0.32 -0.5
690,227 + SM_b21056 0.32 +0.1
690,228 - SM_b21056 0.32 +0.8
690,573 + SM_b21056 0.47 +0.2
690,574 - SM_b21056 0.47 -2.5
690,583 + SM_b21056 0.48 -0.5
690,666 + SM_b21056 0.51 -0.2
690,666 + SM_b21056 0.51 +0.8
690,666 + SM_b21056 0.51 +2.0
690,666 + SM_b21056 0.51 +1.8
690,666 + SM_b21056 0.51 +3.4
690,667 - SM_b21056 0.51 +2.4
690,667 - SM_b21056 0.51 -1.6
690,667 - SM_b21056 0.51 -1.4
690,667 - SM_b21056 0.51 +0.8
690,670 + SM_b21056 0.51 -0.1
690,731 + SM_b21056 0.54 -2.7
690,772 + SM_b21056 0.56 -2.4
690,773 - SM_b21056 0.56 -0.4
690,774 + SM_b21056 0.56 +2.1
690,775 - SM_b21056 0.56 +0.6
690,958 + SM_b21056 0.64 +0.3
691,109 + SM_b21056 0.70 +0.0
691,109 + SM_b21056 0.70 -3.0
691,118 + SM_b21056 0.71 +0.3
691,119 - SM_b21056 0.71 -0.6
691,178 + SM_b21056 0.73 +1.9
691,178 + SM_b21056 0.73 -2.9
691,183 + SM_b21056 0.73 -0.0
691,184 - SM_b21056 0.73 +0.3
691,242 - SM_b21056 0.76 +0.7
691,242 - SM_b21056 0.76 +1.1
691,242 - SM_b21056 0.76 +0.5
691,272 - SM_b21056 0.77 +0.7
691,303 + SM_b21056 0.79 -3.0
691,304 - SM_b21056 0.79 -0.1
691,304 - SM_b21056 0.79 +0.1
691,403 + SM_b21056 0.83 +1.4
691,403 + SM_b21056 0.83 -0.2
691,403 + SM_b21056 0.83 +0.4
691,403 + SM_b21056 0.83 +0.6
691,404 - SM_b21056 0.83 -0.5
691,660 + +0.0
691,660 + +0.6
691,661 - -0.7
691,676 + +0.8
691,676 + -1.5
691,734 - -0.3
691,760 + -0.1
691,761 - -0.5
692,068 + SM_b21057 0.34 +0.5
692,068 + SM_b21057 0.34 +0.0
692,068 + SM_b21057 0.34 +0.0
692,069 - SM_b21057 0.34 +1.1
692,069 - SM_b21057 0.34 +0.3
692,069 - SM_b21057 0.34 -0.6
692,069 - SM_b21057 0.34 +0.5
692,147 + SM_b21057 0.43 +0.6
692,147 + SM_b21057 0.43 -0.2
692,228 + SM_b21057 0.52 +0.2
692,236 + SM_b21057 0.53 -2.1
692,274 + SM_b21057 0.58 -0.0
692,275 - SM_b21057 0.58 -0.4
692,275 - SM_b21057 0.58 -3.2
692,531 + SM_b21057 0.87 +2.9
692,531 + SM_b21057 0.87 +0.3
692,532 - SM_b21057 0.87 +0.5
692,648 + -1.2
692,648 + -0.5
692,710 - -0.3
692,710 - -0.4

Or see this region's nucleotide sequence