Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21042 and SM_b21043 are separated by 609 nucleotides SM_b21043 and SM_b21044 are separated by 175 nucleotides
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
SM_b21043: SM_b21043 - hypothetical protein, at 663,077 to 663,646
_b21043
SM_b21044: SM_b21044 - ATP-dependent DNA ligase, at 663,822 to 665,732
_b21044
Position (kb) 663
664 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 662.198 kb on + strand, within SM_b21042 at 662.199 kb on - strand, within SM_b21042 at 662.340 kb on + strand, within SM_b21042 at 662.369 kb on + strand at 662.370 kb on - strand at 662.370 kb on - strand at 662.605 kb on - strand at 662.652 kb on + strand at 662.693 kb on + strand at 662.693 kb on + strand at 662.694 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.744 kb on + strand at 662.782 kb on - strand at 662.801 kb on + strand at 662.802 kb on - strand at 662.802 kb on - strand at 662.935 kb on - strand at 662.936 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 663.026 kb on + strand at 663.027 kb on - strand at 663.034 kb on - strand at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.387 kb on + strand, within SM_b21043 at 663.391 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.644 kb on + strand at 663.676 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.767 kb on + strand at 663.823 kb on + strand at 663.823 kb on + strand at 663.824 kb on - strand at 663.824 kb on - strand at 663.873 kb on - strand at 663.959 kb on - strand at 663.998 kb on - strand at 664.048 kb on + strand at 664.049 kb on - strand, within SM_b21044 at 664.305 kb on + strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.495 kb on - strand, within SM_b21044 at 664.608 kb on + strand, within SM_b21044 at 664.609 kb on - strand, within SM_b21044
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 662,198 + SM_b21042 0.78 -0.2 662,199 - SM_b21042 0.78 -0.9 662,340 + SM_b21042 0.90 +0.9 662,369 + +0.1 662,370 - +0.4 662,370 - -0.3 662,605 - -0.5 662,652 + +1.4 662,693 + -1.0 662,693 + -1.7 662,694 - -2.7 662,699 - +1.7 662,699 - -2.2 662,699 - -0.1 662,744 + +0.3 662,782 - +1.1 662,801 + +0.4 662,802 - +0.5 662,802 - -0.7 662,935 - -0.3 662,936 + +0.2 662,940 + -1.8 662,940 + +0.8 662,940 + +1.9 662,940 + +0.0 662,941 - -0.0 662,941 - -0.3 662,941 - +0.8 662,946 + -0.6 662,946 + -1.2 662,946 + +1.1 662,946 + -0.3 662,947 - -0.5 662,947 - -0.4 662,947 - +0.6 662,947 - +0.3 663,026 + -3.8 663,027 - -0.8 663,034 - +0.8 663,229 + SM_b21043 0.27 +0.0 663,229 + SM_b21043 0.27 -2.0 663,229 + SM_b21043 0.27 -3.8 663,229 + SM_b21043 0.27 +0.4 663,230 - SM_b21043 0.27 -1.5 663,230 - SM_b21043 0.27 -2.2 663,230 - SM_b21043 0.27 -0.5 663,230 - SM_b21043 0.27 -2.5 663,230 - SM_b21043 0.27 -1.4 663,230 - SM_b21043 0.27 -1.1 663,232 - SM_b21043 0.27 -2.7 663,232 - SM_b21043 0.27 -0.7 663,387 + SM_b21043 0.54 +0.3 663,391 + SM_b21043 0.55 +0.9 663,450 + SM_b21043 0.65 +0.3 663,450 + SM_b21043 0.65 -0.4 663,644 + -0.5 663,676 + -0.1 663,755 + +1.1 663,755 + +0.0 663,755 + +0.2 663,767 + +0.6 663,823 + -2.1 663,823 + -3.5 663,824 - -0.1 663,824 - +0.6 663,873 - +0.5 663,959 - +0.2 663,998 - -1.4 664,048 + +1.1 664,049 - SM_b21044 0.12 -0.8 664,305 + SM_b21044 0.25 +0.9 664,306 - SM_b21044 0.25 -2.7 664,306 - SM_b21044 0.25 +0.4 664,468 + SM_b21044 0.34 -1.5 664,468 + SM_b21044 0.34 +1.1 664,495 - SM_b21044 0.35 -1.9 664,608 + SM_b21044 0.41 +0.4 664,609 - SM_b21044 0.41 +3.5
Or see this region's nucleotide sequence