Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21016 and SM_b21017 are separated by 2 nucleotides SM_b21017 and SM_b21018 overlap by 4 nucleotides
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
Position (kb) 640
641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 639.446 kb on + strand at 639.452 kb on + strand at 639.452 kb on + strand at 639.453 kb on - strand at 639.460 kb on + strand at 639.461 kb on - strand at 639.461 kb on - strand at 639.624 kb on + strand, within SM_b21016 at 639.624 kb on + strand, within SM_b21016 at 639.625 kb on - strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.772 kb on - strand, within SM_b21016 at 639.803 kb on + strand, within SM_b21016 at 639.809 kb on + strand, within SM_b21016 at 639.810 kb on - strand, within SM_b21016 at 639.815 kb on + strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.137 kb on - strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.631 kb on - strand, within SM_b21017 at 640.714 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 641.070 kb on + strand, within SM_b21017 at 641.071 kb on - strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.196 kb on - strand, within SM_b21017 at 641.241 kb on + strand, within SM_b21017 at 641.312 kb on + strand at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 639,446 + +1.0 639,452 + +0.5 639,452 + +0.1 639,453 - -0.1 639,460 + +0.8 639,461 - +1.0 639,461 - -2.7 639,624 + SM_b21016 0.25 -0.5 639,624 + SM_b21016 0.25 -1.2 639,625 - SM_b21016 0.25 -0.4 639,758 + SM_b21016 0.38 +0.6 639,758 + SM_b21016 0.38 +0.5 639,759 - SM_b21016 0.38 -0.3 639,759 - SM_b21016 0.38 -1.5 639,772 - SM_b21016 0.40 +1.7 639,803 + SM_b21016 0.43 -1.0 639,809 + SM_b21016 0.43 -1.5 639,810 - SM_b21016 0.43 +0.2 639,815 + SM_b21016 0.44 -0.8 640,011 - SM_b21016 0.63 +0.7 640,011 - SM_b21016 0.63 -1.0 640,013 + SM_b21016 0.63 -0.1 640,013 + SM_b21016 0.63 +0.2 640,014 - SM_b21016 0.63 -0.3 640,014 - SM_b21016 0.63 -0.4 640,014 - SM_b21016 0.63 -0.2 640,136 + SM_b21016 0.75 +0.1 640,136 + SM_b21016 0.75 -0.1 640,137 - SM_b21016 0.75 -0.4 640,205 + SM_b21016 0.81 -2.3 640,205 + SM_b21016 0.81 +0.3 640,205 + SM_b21016 0.81 -0.8 640,206 - SM_b21016 0.82 -0.9 640,206 - SM_b21016 0.82 +1.3 640,206 - SM_b21016 0.82 +1.2 640,206 - SM_b21016 0.82 +0.7 640,630 + SM_b21017 0.23 -0.6 640,630 + SM_b21017 0.23 -0.6 640,630 + SM_b21017 0.23 +0.1 640,631 - SM_b21017 0.23 +0.9 640,714 + SM_b21017 0.31 +0.1 640,765 + SM_b21017 0.36 -0.5 640,765 + SM_b21017 0.36 +0.4 640,765 + SM_b21017 0.36 -2.0 640,766 - SM_b21017 0.36 -1.3 640,766 - SM_b21017 0.36 -0.1 641,070 + SM_b21017 0.66 +0.6 641,071 - SM_b21017 0.66 -0.3 641,164 + SM_b21017 0.76 +0.0 641,164 + SM_b21017 0.76 -2.8 641,165 - SM_b21017 0.76 -2.7 641,165 - SM_b21017 0.76 +0.4 641,196 - SM_b21017 0.79 -0.5 641,241 + SM_b21017 0.83 -0.7 641,312 + -0.7 641,580 + SM_b21018 0.17 +1.4 641,626 + SM_b21018 0.21 +0.8 641,690 + SM_b21018 0.27 +1.8 641,690 + SM_b21018 0.27 +0.6 641,690 + SM_b21018 0.27 -0.9 641,691 - SM_b21018 0.27 +0.3 641,691 - SM_b21018 0.27 +0.0 641,831 - SM_b21018 0.41 +1.7 641,837 + SM_b21018 0.42 +0.6 641,880 + SM_b21018 0.46 +1.4 642,106 - SM_b21018 0.68 +0.5 642,106 - SM_b21018 0.68 +0.9 642,254 - SM_b21018 0.82 -1.2 642,277 + SM_b21018 0.84 -1.1 642,277 + SM_b21018 0.84 +1.2 642,278 - SM_b21018 0.84 +1.5 642,348 + -0.1 642,349 - +1.1 642,349 - -0.8 642,396 - -2.7 642,396 - -1.3
Or see this region's nucleotide sequence