Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20981 and SM_b20982 are separated by 77 nucleotides SM_b20982 and SM_b20983 are separated by 45 nucleotides SM_b20983 and SM_b20984 overlap by 16 nucleotides
SM_b20981: SM_b20981 - C4-dicarboxylate transporter substrate-binding protein precursor, at 1,213,597 to 1,214,574
_b20981
SM_b20982: SM_b20982 - hypothetical protein, at 1,214,652 to 1,214,912
_b20982
SM_b20983: SM_b20983 - hypothetical protein, at 1,214,958 to 1,215,320
_b20983
SM_b20984: SM_b20984 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 1,215,305 to 1,217,767
_b20984
Position (kb)
1214
1215
1216 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.992 kb on - strand, within SM_b20981 at 1213.992 kb on - strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.031 kb on - strand, within SM_b20981 at 1214.031 kb on - strand, within SM_b20981 at 1214.204 kb on + strand, within SM_b20981 at 1214.205 kb on - strand, within SM_b20981 at 1214.205 kb on - strand, within SM_b20981 at 1214.250 kb on - strand, within SM_b20981 at 1214.250 kb on - strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.256 kb on - strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.505 kb on - strand at 1214.587 kb on - strand at 1214.587 kb on - strand at 1214.974 kb on - strand at 1215.109 kb on + strand, within SM_b20983 at 1215.268 kb on - strand, within SM_b20983 at 1215.268 kb on - strand, within SM_b20983 at 1215.284 kb on + strand at 1215.285 kb on - strand at 1215.440 kb on + strand at 1215.440 kb on + strand at 1215.440 kb on + strand at 1215.485 kb on + strand at 1215.485 kb on + strand at 1215.518 kb on + strand at 1215.518 kb on + strand at 1215.519 kb on - strand at 1215.542 kb on + strand at 1215.542 kb on + strand at 1215.543 kb on - strand at 1215.543 kb on - strand at 1215.544 kb on + strand at 1215.545 kb on - strand at 1215.545 kb on - strand at 1215.617 kb on + strand, within SM_b20984 at 1215.618 kb on - strand, within SM_b20984 at 1215.698 kb on + strand, within SM_b20984 at 1215.698 kb on + strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.885 kb on - strand, within SM_b20984 at 1216.169 kb on + strand, within SM_b20984 at 1216.169 kb on + strand, within SM_b20984 at 1216.295 kb on + strand, within SM_b20984
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,213,991 + SM_b20981 0.40 -0.9 1,213,991 + SM_b20981 0.40 -0.5 1,213,991 + SM_b20981 0.40 +1.8 1,213,991 + SM_b20981 0.40 +0.2 1,213,991 + SM_b20981 0.40 -0.5 1,213,991 + SM_b20981 0.40 +0.3 1,213,991 + SM_b20981 0.40 -0.1 1,213,992 - SM_b20981 0.40 +1.2 1,213,992 - SM_b20981 0.40 -0.9 1,214,030 + SM_b20981 0.44 -0.5 1,214,030 + SM_b20981 0.44 +0.4 1,214,030 + SM_b20981 0.44 -0.5 1,214,031 - SM_b20981 0.44 -1.1 1,214,031 - SM_b20981 0.44 +0.3 1,214,204 + SM_b20981 0.62 +0.8 1,214,205 - SM_b20981 0.62 +0.3 1,214,205 - SM_b20981 0.62 +0.9 1,214,250 - SM_b20981 0.67 +0.0 1,214,250 - SM_b20981 0.67 -1.1 1,214,255 + SM_b20981 0.67 -0.8 1,214,255 + SM_b20981 0.67 -0.2 1,214,255 + SM_b20981 0.67 +1.2 1,214,256 - SM_b20981 0.67 -1.2 1,214,438 + SM_b20981 0.86 +0.0 1,214,438 + SM_b20981 0.86 -0.1 1,214,438 + SM_b20981 0.86 -1.1 1,214,438 + SM_b20981 0.86 +0.6 1,214,505 - +1.3 1,214,587 - -0.2 1,214,587 - -1.8 1,214,974 - +0.4 1,215,109 + SM_b20983 0.42 +0.9 1,215,268 - SM_b20983 0.85 +0.1 1,215,268 - SM_b20983 0.85 +1.0 1,215,284 + -1.4 1,215,285 - +3.5 1,215,440 + -0.0 1,215,440 + -0.1 1,215,440 + +1.2 1,215,485 + -0.6 1,215,485 + -0.3 1,215,518 + +1.3 1,215,518 + -1.3 1,215,519 - +0.4 1,215,542 + -2.4 1,215,542 + -2.6 1,215,543 - -0.2 1,215,543 - -0.4 1,215,544 + +0.3 1,215,545 - +0.5 1,215,545 - -2.2 1,215,617 + SM_b20984 0.13 +0.0 1,215,618 - SM_b20984 0.13 +0.3 1,215,698 + SM_b20984 0.16 +0.2 1,215,698 + SM_b20984 0.16 +2.8 1,215,699 - SM_b20984 0.16 -0.0 1,215,699 - SM_b20984 0.16 -0.4 1,215,699 - SM_b20984 0.16 +1.1 1,215,884 + SM_b20984 0.24 -0.7 1,215,884 + SM_b20984 0.24 +0.3 1,215,884 + SM_b20984 0.24 -0.6 1,215,885 - SM_b20984 0.24 -2.0 1,216,169 + SM_b20984 0.35 +1.5 1,216,169 + SM_b20984 0.35 -0.6 1,216,295 + SM_b20984 0.40 -1.0
Or see this region's nucleotide sequence