Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20968 and SM_b20969 are separated by 3 nucleotides SM_b20969 and SM_b20970 overlap by 8 nucleotides SM_b20970 and SM_b20971 are separated by 12 nucleotides
SM_b20968: SM_b20968 - hypothetical protein, at 1,197,418 to 1,199,130
_b20968
SM_b20969: SM_b20969 - sugar uptake ABC transporter permease, at 1,199,134 to 1,199,946
_b20969
SM_b20970: SM_b20970 - sugar uptake ABC transporter permease, at 1,199,939 to 1,200,898
_b20970
SM_b20971: SM_b20971 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,200,911 to 1,202,143
_b20971
Position (kb)
1199
1200 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1198.158 kb on - strand, within SM_b20968 at 1198.271 kb on + strand, within SM_b20968 at 1198.418 kb on + strand, within SM_b20968 at 1198.419 kb on - strand, within SM_b20968 at 1198.419 kb on - strand, within SM_b20968 at 1198.419 kb on - strand, within SM_b20968 at 1198.475 kb on + strand, within SM_b20968 at 1198.475 kb on + strand, within SM_b20968 at 1198.475 kb on + strand, within SM_b20968 at 1198.476 kb on - strand, within SM_b20968 at 1198.656 kb on + strand, within SM_b20968 at 1198.656 kb on + strand, within SM_b20968 at 1198.787 kb on + strand, within SM_b20968 at 1198.788 kb on - strand, within SM_b20968 at 1198.793 kb on + strand, within SM_b20968 at 1198.793 kb on + strand, within SM_b20968 at 1198.794 kb on - strand, within SM_b20968 at 1198.794 kb on - strand, within SM_b20968 at 1198.794 kb on - strand, within SM_b20968 at 1199.030 kb on + strand at 1199.136 kb on - strand at 1199.136 kb on - strand at 1199.136 kb on - strand at 1199.172 kb on + strand at 1199.172 kb on + strand at 1199.173 kb on - strand at 1199.173 kb on - strand at 1199.174 kb on + strand at 1199.174 kb on + strand at 1199.175 kb on - strand at 1199.175 kb on - strand at 1199.298 kb on - strand, within SM_b20969 at 1199.336 kb on + strand, within SM_b20969 at 1199.367 kb on + strand, within SM_b20969 at 1199.367 kb on + strand, within SM_b20969 at 1199.417 kb on + strand, within SM_b20969 at 1199.417 kb on + strand, within SM_b20969 at 1199.418 kb on - strand, within SM_b20969 at 1199.486 kb on + strand, within SM_b20969 at 1199.486 kb on + strand, within SM_b20969 at 1199.487 kb on - strand, within SM_b20969 at 1199.525 kb on + strand, within SM_b20969 at 1199.525 kb on + strand, within SM_b20969 at 1199.526 kb on - strand, within SM_b20969 at 1199.586 kb on - strand, within SM_b20969 at 1199.614 kb on + strand, within SM_b20969 at 1199.614 kb on + strand, within SM_b20969 at 1199.614 kb on + strand, within SM_b20969 at 1199.615 kb on - strand, within SM_b20969 at 1199.615 kb on - strand, within SM_b20969 at 1199.756 kb on + strand, within SM_b20969 at 1199.757 kb on - strand, within SM_b20969 at 1199.841 kb on - strand, within SM_b20969 at 1199.842 kb on + strand, within SM_b20969 at 1199.842 kb on + strand, within SM_b20969 at 1199.843 kb on - strand, within SM_b20969 at 1199.843 kb on - strand, within SM_b20969 at 1199.883 kb on - strand at 1199.940 kb on + strand at 1199.940 kb on + strand at 1199.940 kb on + strand at 1199.982 kb on + strand at 1199.983 kb on - strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.986 kb on - strand at 1199.986 kb on - strand at 1199.986 kb on - strand at 1200.102 kb on + strand, within SM_b20970 at 1200.103 kb on - strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.123 kb on + strand, within SM_b20970 at 1200.123 kb on + strand, within SM_b20970 at 1200.124 kb on - strand, within SM_b20970 at 1200.124 kb on - strand, within SM_b20970 at 1200.165 kb on - strand, within SM_b20970 at 1200.165 kb on - strand, within SM_b20970 at 1200.343 kb on + strand, within SM_b20970 at 1200.472 kb on - strand, within SM_b20970 at 1200.616 kb on - strand, within SM_b20970 at 1200.616 kb on - strand, within SM_b20970 at 1200.687 kb on + strand, within SM_b20970 at 1200.687 kb on + strand, within SM_b20970 at 1200.688 kb on - strand, within SM_b20970 at 1200.688 kb on - strand, within SM_b20970 at 1200.709 kb on + strand, within SM_b20970 at 1200.794 kb on + strand, within SM_b20970
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,198,158 - SM_b20968 0.43 -2.1 1,198,271 + SM_b20968 0.50 -0.7 1,198,418 + SM_b20968 0.58 +1.0 1,198,419 - SM_b20968 0.58 -1.0 1,198,419 - SM_b20968 0.58 -0.6 1,198,419 - SM_b20968 0.58 +0.6 1,198,475 + SM_b20968 0.62 -1.1 1,198,475 + SM_b20968 0.62 +0.1 1,198,475 + SM_b20968 0.62 -0.5 1,198,476 - SM_b20968 0.62 -2.2 1,198,656 + SM_b20968 0.72 -2.0 1,198,656 + SM_b20968 0.72 -0.0 1,198,787 + SM_b20968 0.80 -0.4 1,198,788 - SM_b20968 0.80 -1.4 1,198,793 + SM_b20968 0.80 +0.2 1,198,793 + SM_b20968 0.80 -0.9 1,198,794 - SM_b20968 0.80 -0.8 1,198,794 - SM_b20968 0.80 -0.8 1,198,794 - SM_b20968 0.80 +0.2 1,199,030 + -0.1 1,199,136 - -1.0 1,199,136 - -0.7 1,199,136 - -0.8 1,199,172 + +0.4 1,199,172 + +0.2 1,199,173 - -1.1 1,199,173 - +0.9 1,199,174 + -0.0 1,199,174 + +0.6 1,199,175 - -0.2 1,199,175 - -1.0 1,199,298 - SM_b20969 0.20 -2.0 1,199,336 + SM_b20969 0.25 -0.1 1,199,367 + SM_b20969 0.29 -0.4 1,199,367 + SM_b20969 0.29 -0.6 1,199,417 + SM_b20969 0.35 -0.1 1,199,417 + SM_b20969 0.35 +0.4 1,199,418 - SM_b20969 0.35 -1.7 1,199,486 + SM_b20969 0.43 +0.1 1,199,486 + SM_b20969 0.43 -0.3 1,199,487 - SM_b20969 0.43 -0.3 1,199,525 + SM_b20969 0.48 +0.3 1,199,525 + SM_b20969 0.48 -2.3 1,199,526 - SM_b20969 0.48 -0.2 1,199,586 - SM_b20969 0.56 +1.1 1,199,614 + SM_b20969 0.59 +2.1 1,199,614 + SM_b20969 0.59 +0.0 1,199,614 + SM_b20969 0.59 -2.1 1,199,615 - SM_b20969 0.59 +0.5 1,199,615 - SM_b20969 0.59 +1.0 1,199,756 + SM_b20969 0.77 -0.4 1,199,757 - SM_b20969 0.77 -3.9 1,199,841 - SM_b20969 0.87 -0.2 1,199,842 + SM_b20969 0.87 +0.2 1,199,842 + SM_b20969 0.87 +0.1 1,199,843 - SM_b20969 0.87 +0.1 1,199,843 - SM_b20969 0.87 -0.6 1,199,883 - -2.3 1,199,940 + -0.6 1,199,940 + -0.2 1,199,940 + -0.6 1,199,982 + +0.8 1,199,983 - -0.8 1,199,985 + -1.1 1,199,985 + -0.5 1,199,985 + -1.1 1,199,985 + -1.0 1,199,986 - -1.4 1,199,986 - +2.2 1,199,986 - -0.7 1,200,102 + SM_b20970 0.17 -0.3 1,200,103 - SM_b20970 0.17 -0.7 1,200,108 + SM_b20970 0.18 +0.2 1,200,108 + SM_b20970 0.18 +0.7 1,200,108 + SM_b20970 0.18 -0.4 1,200,108 + SM_b20970 0.18 +1.2 1,200,108 + SM_b20970 0.18 +0.2 1,200,108 + SM_b20970 0.18 +0.0 1,200,108 + SM_b20970 0.18 -2.2 1,200,109 - SM_b20970 0.18 +0.1 1,200,109 - SM_b20970 0.18 -1.1 1,200,109 - SM_b20970 0.18 +0.4 1,200,109 - SM_b20970 0.18 -0.6 1,200,109 - SM_b20970 0.18 +0.2 1,200,123 + SM_b20970 0.19 -2.8 1,200,123 + SM_b20970 0.19 +1.6 1,200,124 - SM_b20970 0.19 +1.2 1,200,124 - SM_b20970 0.19 -1.5 1,200,165 - SM_b20970 0.24 -1.2 1,200,165 - SM_b20970 0.24 +0.5 1,200,343 + SM_b20970 0.42 +0.9 1,200,472 - SM_b20970 0.56 +0.3 1,200,616 - SM_b20970 0.71 -1.0 1,200,616 - SM_b20970 0.71 +0.0 1,200,687 + SM_b20970 0.78 +1.2 1,200,687 + SM_b20970 0.78 -0.6 1,200,688 - SM_b20970 0.78 -0.5 1,200,688 - SM_b20970 0.78 +3.2 1,200,709 + SM_b20970 0.80 -2.0 1,200,794 + SM_b20970 0.89 +0.7
Or see this region's nucleotide sequence