Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20937 and SM_b20938 are separated by 46 nucleotides SM_b20938 and SM_b20939 overlap by 4 nucleotides SM_b20939 and SM_b20940 overlap by 4 nucleotides
SM_b20937: SM_b20937 - ABC transporter ATP-binding protein/permease, at 1,161,991 to 1,163,811
_b20937
SM_b20938: SM_b20938 - hypothetical protein, at 1,163,858 to 1,164,595
_b20938
SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951
_b20939
SM_b20940: SM_b20940 - hypothetical protein, at 1,164,948 to 1,165,658
_b20940
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1162.874 kb on - strand, within SM_b20937 at 1162.899 kb on + strand, within SM_b20937 at 1162.900 kb on - strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1163.206 kb on - strand, within SM_b20937 at 1163.838 kb on + strand at 1164.019 kb on + strand, within SM_b20938 at 1164.020 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.082 kb on - strand, within SM_b20938 at 1164.087 kb on + strand, within SM_b20938 at 1164.088 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.324 kb on - strand at 1164.324 kb on - strand, within SM_b20938 at 1164.432 kb on + strand, within SM_b20938 at 1164.603 kb on - strand at 1164.677 kb on + strand, within SM_b20939 at 1164.763 kb on - strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.765 kb on - strand at 1164.791 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.103 kb on - strand, within SM_b20940 at 1165.190 kb on - strand, within SM_b20940 at 1165.207 kb on + strand, within SM_b20940 at 1165.273 kb on + strand, within SM_b20940 at 1165.274 kb on - strand, within SM_b20940 at 1165.408 kb on + strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.541 kb on + strand, within SM_b20940 at 1165.542 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,162,874 - SM_b20937 0.48 -2.4 1,162,899 + SM_b20937 0.50 -2.0 1,162,900 - SM_b20937 0.50 +0.5 1,162,953 + SM_b20937 0.53 -0.5 1,162,953 + SM_b20937 0.53 +2.5 1,162,953 + SM_b20937 0.53 +0.5 1,162,954 - SM_b20937 0.53 +1.3 1,162,954 - SM_b20937 0.53 -1.1 1,162,954 - SM_b20937 0.53 -0.5 1,162,954 - SM_b20937 0.53 +0.2 1,162,954 - SM_b20937 0.53 +0.1 1,163,206 - SM_b20937 0.67 +1.4 1,163,838 + -0.1 1,164,019 + SM_b20938 0.22 +0.0 1,164,020 - SM_b20938 0.22 +1.8 1,164,040 - SM_b20938 0.25 +1.9 1,164,040 - SM_b20938 0.25 +1.0 1,164,081 + SM_b20938 0.30 +0.4 1,164,081 + SM_b20938 0.30 +0.0 1,164,081 + SM_b20938 0.30 -1.8 1,164,081 + SM_b20938 0.30 +0.4 1,164,082 - SM_b20938 0.30 -0.4 1,164,087 + SM_b20938 0.31 +1.1 1,164,088 - SM_b20938 0.31 +0.6 1,164,120 - SM_b20938 0.36 +0.9 1,164,120 - SM_b20938 0.36 -2.5 1,164,323 + SM_b20938 0.63 -0.7 1,164,323 + SM_b20938 0.63 -0.8 1,164,324 - +2.8 1,164,324 - SM_b20938 0.63 -2.8 1,164,432 + SM_b20938 0.78 -0.3 1,164,603 - +0.2 1,164,677 + SM_b20939 0.24 -0.7 1,164,763 - SM_b20939 0.47 -0.2 1,164,764 + SM_b20939 0.48 +0.0 1,164,764 + SM_b20939 0.48 -3.5 1,164,764 + SM_b20939 0.48 +1.4 1,164,765 - -0.4 1,164,791 + SM_b20939 0.55 +0.5 1,164,851 + SM_b20939 0.72 -1.8 1,164,851 + SM_b20939 0.72 +0.7 1,164,851 + SM_b20939 0.72 -1.3 1,164,851 + SM_b20939 0.72 +0.7 1,164,851 + SM_b20939 0.72 +0.2 1,164,851 + SM_b20939 0.72 +0.9 1,164,852 - SM_b20939 0.72 -0.6 1,164,852 - SM_b20939 0.72 +0.2 1,165,100 + SM_b20940 0.21 -0.4 1,165,100 + SM_b20940 0.21 -0.5 1,165,100 + SM_b20940 0.21 -2.1 1,165,100 + SM_b20940 0.21 -0.2 1,165,101 - SM_b20940 0.22 +1.1 1,165,101 - SM_b20940 0.22 +0.8 1,165,102 + SM_b20940 0.22 +1.5 1,165,102 + SM_b20940 0.22 -0.8 1,165,102 + SM_b20940 0.22 -0.5 1,165,102 + SM_b20940 0.22 -0.6 1,165,103 - SM_b20940 0.22 -0.2 1,165,190 - SM_b20940 0.34 +0.7 1,165,207 + SM_b20940 0.36 +0.3 1,165,273 + SM_b20940 0.46 +0.0 1,165,274 - SM_b20940 0.46 -0.2 1,165,408 + SM_b20940 0.65 -1.7 1,165,409 - SM_b20940 0.65 +1.8 1,165,409 - SM_b20940 0.65 -1.6 1,165,541 + SM_b20940 0.83 +0.4 1,165,542 - SM_b20940 0.84 -0.1 1,165,559 - SM_b20940 0.86 +1.3 1,165,559 - SM_b20940 0.86 +0.6
Or see this region's nucleotide sequence