Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20894 and SM_b20895 are separated by 207 nucleotides SM_b20895 and SM_b20896 are separated by 346 nucleotides
SM_b20894: SM_b20894 - L-arabinose ABC transporter, ATPase component (from data) , at 1,301,299 to 1,302,819
_b20894
SM_b20895: SM_b20895 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,303,027 to 1,304,094
_b20895
SM_b20896: SM_b20896 - LysR family transcriptional regulator, at 1,304,441 to 1,305,349
_b20896
Position (kb)
1303
1304
1305 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1302.027 kb on - strand, within SM_b20894 at 1302.639 kb on - strand, within SM_b20894 at 1302.657 kb on - strand, within SM_b20894 at 1302.657 kb on - strand, within SM_b20894 at 1302.802 kb on + strand at 1302.803 kb on - strand at 1302.826 kb on + strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.835 kb on + strand at 1302.835 kb on + strand at 1302.982 kb on + strand at 1302.983 kb on - strand at 1303.052 kb on + strand at 1303.053 kb on - strand at 1303.053 kb on - strand at 1303.148 kb on + strand, within SM_b20895 at 1303.148 kb on + strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.254 kb on - strand, within SM_b20895 at 1303.423 kb on - strand, within SM_b20895 at 1303.715 kb on + strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.718 kb on + strand, within SM_b20895 at 1303.754 kb on + strand, within SM_b20895 at 1303.755 kb on - strand, within SM_b20895 at 1303.920 kb on + strand, within SM_b20895 at 1304.193 kb on + strand at 1304.193 kb on + strand at 1304.194 kb on - strand at 1304.214 kb on + strand at 1304.214 kb on + strand at 1304.215 kb on - strand at 1304.220 kb on - strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.242 kb on - strand at 1304.242 kb on - strand at 1304.242 kb on - strand at 1305.037 kb on + strand, within SM_b20896 at 1305.038 kb on - strand, within SM_b20896
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,302,027 - SM_b20894 0.48 +0.5 1,302,639 - SM_b20894 0.88 -0.3 1,302,657 - SM_b20894 0.89 -0.6 1,302,657 - SM_b20894 0.89 +0.1 1,302,802 + +0.2 1,302,803 - +0.5 1,302,826 + +0.2 1,302,827 - +0.6 1,302,827 - -0.6 1,302,827 - -0.2 1,302,827 - +0.6 1,302,835 + -1.6 1,302,835 + -1.5 1,302,982 + -1.4 1,302,983 - -0.4 1,303,052 + +0.0 1,303,053 - +0.4 1,303,053 - +0.2 1,303,148 + SM_b20895 0.11 +0.1 1,303,148 + SM_b20895 0.11 +0.5 1,303,149 - SM_b20895 0.11 +0.2 1,303,149 - SM_b20895 0.11 +1.6 1,303,149 - SM_b20895 0.11 -0.5 1,303,254 - SM_b20895 0.21 +1.0 1,303,423 - SM_b20895 0.37 +0.5 1,303,715 + SM_b20895 0.64 +1.1 1,303,716 - SM_b20895 0.65 -2.4 1,303,716 - SM_b20895 0.65 +0.6 1,303,716 - SM_b20895 0.65 -2.2 1,303,718 + SM_b20895 0.65 +2.3 1,303,754 + SM_b20895 0.68 -0.0 1,303,755 - SM_b20895 0.68 +0.3 1,303,920 + SM_b20895 0.84 +3.0 1,304,193 + -1.1 1,304,193 + -1.4 1,304,194 - +0.1 1,304,214 + +1.2 1,304,214 + -0.2 1,304,215 - -0.7 1,304,220 - -0.4 1,304,241 + -1.4 1,304,241 + +0.5 1,304,241 + +0.7 1,304,241 + +0.5 1,304,242 - +2.2 1,304,242 - -0.6 1,304,242 - +0.4 1,305,037 + SM_b20896 0.66 +1.4 1,305,038 - SM_b20896 0.66 -1.1
Or see this region's nucleotide sequence