Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides SM_b20820 and SM_b20821 are separated by 80 nucleotides
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
Position (kb) 608
609
610 Strain fitness (log2 ratio) -2
-1
0
1
2 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820 at 609.663 kb on + strand, within SM_b20820 at 609.664 kb on - strand, within SM_b20820 at 609.923 kb on - strand at 609.988 kb on - strand at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 607,766 + SM_b20818 0.58 -1.3 607,766 + SM_b20818 0.58 -0.2 607,767 - SM_b20818 0.58 +1.8 607,794 - SM_b20818 0.61 -2.1 607,794 - SM_b20818 0.61 +0.0 607,934 + SM_b20818 0.74 +0.2 607,935 - SM_b20818 0.74 +0.5 607,935 - SM_b20818 0.74 -1.5 607,935 - SM_b20818 0.74 +0.7 607,976 + SM_b20818 0.77 +0.9 607,976 + SM_b20818 0.77 +1.2 607,976 + SM_b20818 0.77 -0.6 607,977 - SM_b20818 0.78 -0.3 607,977 - SM_b20818 0.78 +0.3 608,174 + -1.0 608,219 + +0.1 608,220 - -0.3 608,357 + SM_b20819 0.29 +2.6 608,358 - SM_b20819 0.30 -0.4 608,434 - SM_b20819 0.53 -1.5 608,434 - SM_b20819 0.53 +1.1 608,467 + SM_b20819 0.64 -0.5 608,484 - SM_b20819 0.69 +0.3 608,484 - SM_b20819 0.69 +1.0 608,534 + SM_b20819 0.85 +0.1 608,579 + +0.2 608,700 - -1.2 608,808 + +1.6 608,809 - +0.5 608,809 - -2.7 608,809 - +1.9 608,884 - SM_b20820 0.16 -1.0 608,900 + SM_b20820 0.17 -0.5 608,901 - SM_b20820 0.17 -0.5 608,901 - SM_b20820 0.17 +1.2 608,982 + SM_b20820 0.24 -0.9 608,983 - SM_b20820 0.24 -0.1 608,993 - SM_b20820 0.25 -1.7 608,993 - SM_b20820 0.25 -0.1 609,104 + SM_b20820 0.34 +0.4 609,104 + SM_b20820 0.34 -1.0 609,105 - SM_b20820 0.34 +1.2 609,105 - SM_b20820 0.34 +1.1 609,105 - SM_b20820 0.34 +0.2 609,497 - SM_b20820 0.66 +0.2 609,537 + SM_b20820 0.69 -0.8 609,538 - SM_b20820 0.69 -1.1 609,663 + SM_b20820 0.79 +0.6 609,664 - SM_b20820 0.79 +0.6 609,923 - -0.4 609,988 - +0.9 610,229 + SM_b20821 0.28 -2.6 610,229 + SM_b20821 0.28 +0.1 610,230 - SM_b20821 0.29 -2.2 610,568 + SM_b20821 0.71 -0.6 610,568 + SM_b20821 0.71 +1.7 610,568 + SM_b20821 0.71 -0.3 610,610 + SM_b20821 0.76 -2.1 610,611 - SM_b20821 0.76 +1.1 610,631 + SM_b20821 0.79 -0.9 610,631 + SM_b20821 0.79 -1.6 610,653 - SM_b20821 0.81 +0.1
Or see this region's nucleotide sequence